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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatcattccaagtttctttcatgattcatggatgccttggtttatagaatttatgaattttgttttattgcag

Basic information

species Glycine max
transcript GLYMA20G16170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G013890_T01 (Zea mays), 5'ss of exon 6
AAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatcattccaagtttctttcatgattcatggatgccttggtttatagaatttatgaattttgttttattgcag
 |||   ||||||  ||||||||| |||||||| ||| |||||||||| || |||||  |||| || ||||||||| |  | || ||||||||||| || || | |    | |    | || |||     ||||         | | ||  | |   ||  |  | | |    || |||
CAAGCGTACAAAACAATTTTCTGGTGGATGGCGCATGAGAATAGCTCTAGCACGTGCTCTGTTCATTGAGCCTGATTTGCTACTACTTGATGAGCCGACAgtaagttggaaatgtggggttatttttc--ttcac--------ttgcttgcacatgcta-aagctgtatcactttccag

upper sequence: GLYMA20G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 6
AAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatcattccaag-tttctttcat--gattcatggatgccttggtttatagaatttatgaattttgttttattgcag
 || || ||||| || ||||| ||||||||| | |||||||| || |||||||||||| | ||||||||||||||| | ||| | |||||||| ||||||||   |  || ||  ||| ||||  | ||  |||  ||  ||     ||||| |   |||  |    | | ||||  |    
GAAAGCTACAAATACTTTTTCAGGAGGATGGAGAATGCGAATTGCACTTGCTCGTGCACTATTTATAGAGCCTGATTTGTTGTTGCTTGATGAACCTACGgtgtgttttctttgtaaggtttcccttattagatcaatatattttcaggtttctgacattcttttcctctcttttggtag--

upper sequence: GLYMA20G16170.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 6
AAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatcattc-caagtttctttcatgattcatggatgc--cttggttta------------tagaatttatgaattttgttttattgcag
 || || |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||| || |||||||| || |||||   |||| |||   |    |  ||||   |  ||| ||    |||||   |            | | |||| | | |||| |||| ||||||
TAAAGCGACAAAAACCTTTTCTGGAGGATGGCGAATGCGAATTGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATTTATTACTACTTGATGAACCCACGgtacatcatgattgatagaacttcttcagagtatatgtatattacttggcagaattgggtaaaacttgcattttttatttttatttttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193524976|gb|FK482819.1|FK482819
EST:     CTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACG                         AATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCGTACTTGGTTAAA
genomic: CTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatc ... tttattgcagAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCTTACTTGGTTAAA
EST: gi|37995248|gb|CF806837.1|CF806837
EST:     CTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACG                         AATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCTTACT
genomic: CTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatc ... tttattgcagAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCTTACT