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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCCTGTGAGAATAACATGTTCTGTATCTGATCAACATCGTTGTGTGGAAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcagcactgtgactctatgtcctttttgatacagtagataagaattatgatgtttcattgtttctatcattgtttttttcatttagaaatttgactctgtagataacaacag

Basic information

species Glycine max
transcript GLYMA20G16030.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|192328272|gb|FK020477.1|FK020477
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120532986|gb|EH261119.1|EH261119
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         A
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacag-
EST: gi|120493251|gb|EH221418.1|EH221418
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
EST: gi|12691307|gb|BG157643.1|BG157643
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
EST: gi|7146905|gb|AW508827.1|AW508827
EST:     GCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
genomic: GCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
EST: gi|9204212|gb|BE330436.1|BE330436
EST:     AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAG                         GAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA
genomic: AAGGTGGCAATCATACTTGCATATCACAAGCACAAATGCATTCCAATGAGgtttttgcag ... ataacaacagGAGGTGGACATTGAGAGTTGCCACCAGTCAAATACTGGGAGCCATTCTCCA