Sequence
atgc intronic sequence ATGC exonic sequenceACCAACAGATGTAAAGATTGAATTGATTCATAGATTGGCATCTTCTGGGTTATCCGTCATTGAAGCTACTAGTTTTGTATCTCCCAAATGGGTTCCTCAGgtataatggctttaccatatttattttctgacattgatattacgaatgattgttgtggtaaactttcttcttggtgcatttaaatcaacatatttctcaa...
Basic information
species | Glycine max |
transcript | GLYMA20G08360.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G08360.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g16350.1 (Oryza sativa), 5'ss of exon 3
ACCAACAGATGTAAAGATTGAATTGATTCATAGATTGGCATCTTCTGGGTTATCCGTCATTGAAGCTACTAGTTTTGTATCTCCCAAATGGGTTCCTCAGgtataatggctttaccatatttattttctgacattgatattacgaatgattgttgtggtaaactttcttcttggtgcatttaaatcaacatatttctcaa-
|||||| |||||||||||||| | || || ||| ||||| | ||||| ||||| || |||| || ||||||||||| ||||| |||||||| || |||||| | | |||| || | | | | || | | | | | | ||| | | || | | | | | | | ||||| |
TCCAACACATGTAAAGATTGAACTCATACAGAGACTGGCAACCTCTGGATTATCGGTTGTTGAGGCAACTAGTTTTGTCTCTCCAAAATGGGTACCACAGgtaattttggtttagcaattagcatgcattagatacttgcttcttacacatat-acggtttgatattttaaagatcaccatccacccatttttttctataa
upper sequence: GLYMA20G08360.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G175071_T01 (Zea mays), 5'ss of exon 3
ACCAACAGATGTAAAGATTGAATTGATTCATAGATTGGCATCTTCTGGGTTATCCGTCATTGAAGCTACTAGTTTTGTATCTCCCAAATGGGTTCCTCAGgtataatggctttaccatatttattttctgacattgatattacgaatgattgttgtggtaaactttcttcttggtgcatttaa--atcaacatatttctcaa
|||||| ||||||| |||| | || | |||||||| | ||||| ||| | || | || || || |||||||||||||| |||||||| ||||||||||| || |||||| | || | | ||||| | |||| | | || | | || | | | |||| | | | | || |||
GCCAACACCTGTAAAGGTTGAGCTTATACGAAGATTGGCCACATCTGGATTACCTGTTGTGGAGGCAACGAGTTTTGTATCTCCAAAATGGGTACCTCAGgtatagtg-ctttacaaaatct-ctggagaacattcagattagacacctgttttatctgcacctattgtacacattgattttctcaggaccctgatttacaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23062483|gb|BU578511.1|BU578511EST: TATCCGTCATTGAAGCTACTAGTTTTGTATCTCCCAAATGGGTTCCTCAG TTGGCAGATGCAAAGGATGTAATGCAAGCAGTTCATAACCTGGGAGGCATT
genomic: TATCCGTCATTGAAGCTACTAGTTTTGTATCTCCCAAATGGGTTCCTCAGgtataatggc ... tatctttcagTTGGCAGATGCAAAGGATGTAATGCAAGCAGTTCATAACCTGGGAGGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCAACAGATGTAAAGATTGAATTGATTCATAGATTGGCATCTTCTGGGTTATCCGTCATTGAAGCTACTAGTTTTGTATCTCCCAAATGGGTTCCTCAGgtataatggctttaccatatttattttctgacattgatattacgaatgattgttgtggtaaactttcttcttggtgcatttaaatcaacatatttctcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC