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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgactttagttcattttggataagtggttaacacagtatttgtattgcattcaaatacattgtcggcctaacctaattacacaaccaaactctgcag

Basic information

species Glycine max
transcript GLYMA20G04870.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13791400|gb|BG653991.1|BG653991
EST:     TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCT                         CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
genomic: TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgact ... aactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
EST: gi|163918182|gb|EH039898.1|EH039898
EST:     TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCT                         CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
genomic: TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgact ... aactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
EST: gi|33390538|gb|CA853733.1|CA853733
EST:     TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCT                         CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
genomic: TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgact ... aactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
EST: gi|254336158|gb|GR841483.1|GR841483
EST:     TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCT                         CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
genomic: TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgact ... aactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
EST: gi|15664135|gb|BI701506.1|BI701506
EST:     TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCT                         CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
genomic: TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgact ... aactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
EST: gi|19348890|gb|BM893422.1|BM893422
EST:     TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCT                         CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
genomic: TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgact ... aactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
EST: gi|15203904|gb|BI426672.1|BI426672
EST:     TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCT                         CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT
genomic: TTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgact ... aactctgcagCTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATTCTGACGCTGAAGATGATCCATCCACTTTTTTCTCTgtgagtgactttagttcattttggataagtggttaacacagtatttgtattgcattcaaatacattgtcggcctaacctaattacacaaccaaactctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG