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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATCATTTGCTTGAGCATCAGTATCATATGATGAAGTATCCCTTGCCTACAAAGATTCCACTGGCTCCCATACAGAATGGAGTCCATCCAATGCCTGgtaaattcttgcctcatattgtattctcttctcatgttatgcaataattttctgagtttctgactattattcttagtacactgccaaattcctagtcaac...

Basic information

species Glycine max
transcript GLYMA19G44420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G44420.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G46420.2 (Arabidopsis thaliana), 5'ss of exon 5
TTCAATCATTTGCTTGAGCATCAGTATCATATGATGAAGTATCCCTTGCCTACAAAGATTCCACTGGCTCCCATACAGAATGGAGTCCATCCAATG---CCTGgtaaattcttgcctcatattgtattctcttct-catgttatgcaataattttctgagtttctgactattattcttagtacactgccaaattcctagtcaac
   ||||||||||||||||||||||||||  | | |||||||    | | | ||||  |||| ||||  || || ||||| ||  | ||||| |||    ||||||| | ||  |  | |||   | |   |  |  |  |  | |||| ||||  |     | | ||||||||| | |   ||||      || |    ||  
---AATCATTTGCTTGAGCATCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTTCCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTGgtaagt-ctgactccttatatcacttgttggtgtagatggttcaatgatttgtttgtggtttcactattattataa---cactaaatgtttgcagcgcag-

upper sequence: GLYMA19G44420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 5
TTCAATCATTTGCTTGAGCATCAGTATCATATGATGAAGTATCCCTTGCCTACAAAGATTCCACTGGCTCCCATACAGAATGGAGTCCATCCAATGCCTGgtaaattcttgcctcatattgtattctcttctcatgttatgcaataattttctgagtttctgactattattcttagtacactgccaaattcctagtcaac----
|| |||||||||||||||||||||  |||| | | ||| ||||   |  || ||||  ||||  |||| ||||||||||||||| ||||||| ||||||||||| |  |  | | | |    ||| | |  |||||  |      || || |  |   | |  | ||  || |  |  |||||  | ||      |   |    
TTTAATCATTTGCTTGAGCATCAGGCTCATCTCACGAATTATCATGTTTCTCCAAAAGTTCCTTTGGCGCCCATACAGAATGGAATCCATCCCATGCCTGgtaagtattgactttaca----attttatagtcatgcaaaagctcaaattacctatactatttcaatgcttgtgtgagcactgttatataaactattttcatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193487520|gb|FK449673.1|FK449673
EST:     CAAAGATTCCACTGGCTTCCCTATACAGAATGGAGTCCATCCAATGCCTG                         TCAACAACCTACCTATGGGATACCCTGTGCTACAGAAGTCTTCCATTCCTG
genomic: CAAAGATTCCACTGGC-TCCC-ATACAGAATGGAGTCCATCCAATGCCTGgtaaattctt ... tgcagtgcagTCAACAACCTACCTATGGGATACCCTGTGCTACAGAAGTCTTCCATTCCTG
EST: gi|192296878|gb|FG990239.1|FG990239
EST:     TACAAAGATTCCACTGGCTCCCATACAGAATGGAGTCCATCCAATGCCTG                         TCAACAACCTACCTATGGGATACCCTGTGCTACAGAAGTCTTCCATTCCTG
genomic: TACAAAGATTCCACTGGCTCCCATACAGAATGGAGTCCATCCAATGCCTGgtaaattctt ... tgcagtgcagTCAACAACCTACCTATGGGATACCCTGTGCTACAGAAGTCTTCCATTCCTG
EST: gi|193483958|gb|FK452389.1|FK452389
EST:     CAAAGATTCCACTGGCTTCCCTATACAGAATGGAGTCCATCCAATGCCTG                         TCAACAACCTACCTATGGGATACCCTGTGCTACAGAAGTCTTCCATTCCTG
genomic: CAAAGATTCCACTGGC-TCCC-ATACAGAATGGAGTCCATCCAATGCCTGgtaaattctt ... tgcagtgcagTCAACAACCTACCTATGGGATACCCTGTGCTACAGAAGTCTTCCATTCCTG