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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagagtgtatttactacttctaatgtgcatattaccaggtatcaaggaagatattctgtttgctatatcaaatgcttttttatatgaattgctct...

Basic information

species Glycine max
transcript GLYMA19G43690.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401612|gb|EV269865.1|EV269865
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
EST: gi|192303317|gb|FG997403.1|FG997403
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTTTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
EST: gi|254338680|gb|GR849991.1|GR849991
EST:     CCAGAATATAAACCAGAGCCGTCAGAAGG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGAT
genomic: CCAG-ATATAAACCAGAGCCGTCAGAA-Ggtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGAT
EST: gi|192303316|gb|FG997402.1|FG997402
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
EST: gi|15200128|gb|BI424187.1|BI424187
EST:     AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAG                         GAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT
genomic: AAGTATAGAACTGCCAGATATAAACCAGAGCCGTCAGAAGgtatgtagag ... atgcctgcagGAAATTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGATT