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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGAACACTCCGACAACACTTTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAATgtaatgtacttcaaacatcttatgcttcttattaagtgtgtcaagaaaaaagttcattttattgtttttatacgttccacattgagtcagatagaaactttggttgaattatcagtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttag

Basic information

species Glycine max
transcript GLYMA19G42990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42990.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 5
ACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGAACACTCCGACAACACTTTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAATgtaatgtactt--caaacatcttatg---cttcttattaagtgtgtcaagaaaaaagttcattttattgtttttat--acgttccacattgagtcagataga--aactttggttgaattat--ca-gtatcgtcaaatccattatttgatcgtttaatagtgtcatgcattttag
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ACCTGGAATTGCTTGTCTGATGGAACTTGTACCAGGACTCTCCGTCAACACTCTGACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAATgtaatttctttgtcaaaattttcatggaattatttactgcatagatgaagggttcttgtcagtgtaatgctgttatttaagtttcatgttcaatttaatggtgcatatttgggggcattgtgtcatattttgtcgttatcattttctgatccttttatagtgtcatgcattttag