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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacagtttggatttaactttgtggctttgttcctttaattccttacagatgtaatagttttctattgatttctgtttcag

Basic information

species Glycine max
transcript GLYMA19G42180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42180.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G09130.3 (Arabidopsis thaliana), 5'ss of exon 5
ATACACACAGTGGCGGTTGGATCTGCTATAGGTCAAGCCTGTTTGCTACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacag-tttggatttaactttgtggctttgttcctttaattccttacagatg-taatagttttctattgatttctgtttcag----------
 |||| |||||    || ||| | || |||||||| |||||| |  ||||||| || ||  |   ||||||||| ||||||||||||||||| ||||||| ||  || || |   | || ||||   | | || |   ||   |  |||  | | |   |   ||  |  | || ||||           
GTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAGgtatagacttcgact--gcattctggcc--gcttctatggctcaccattgataatcagaacctctcat--acgtttgattcattatgtcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760326|gb|AI965753.1|AI965753
EST:     ACTTTCAGCAGGGTCTCCGGGTAAACGCTNTATGATGCCACATGCTAAAG                         CCATGATTCAGCAGCCTCGTATTCCTTCCTCT
genomic: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacagtttg ... tctgtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCT
EST: gi|254314926|gb|GR829919.1|GR829919
EST:     ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAG                         CCATGATTCAGCAGC-TCGTATTC
genomic: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacagtttg ... tctgtttcagCCATGATTCAGCAGCCTCGTATTC
EST: gi|193318762|gb|FK284268.1|FK284268
EST:     ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAG                         CCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTG
genomic: ACTTTCAGCAGGGTCTCCGGGTAAACGCTTTATGATGCCACATGCTAAAGgtacagtttg ... tctgtttcagCCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTG