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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAGTATGTTCCCGAAACAGTTAATCGTGTGATCAAACATTATAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaatcatgtcagtttggttttgtcatgatccttttgtcagttttattttggaaaatggctttgttaatgttttggattattttcttatcttactgaggttgtatctgttttcttgatatactgcag

Basic information

species Glycine max
transcript GLYMA19G41420.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 5
ACTGGAGTATGTTCCCGAAACAGTTAATCGTGTGATCAAACATTATAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgct--taatcatgtcagtttggttttgtcatgatccttttgtcagttttattttggaaaatggctttgttaatgtt---ttggattattttcttatctta-------ctgaggttgtatctgttttcttgatatactgcag
||| ||||||||||| ||||| ||| |||| || || ||||| || || |||||||||||| ||||||| ||||||||||| || ||||||||||||||||| || |  |||| || | | |||  |||  | ||| || | || |  ||| | |||| | ||| | || | |   |||    ||  | | | || |||||  |       ||||  |||||  | | || ||  |||     ||
ACTTGAGTATGTTCCTGAAACTGTTCATCGGGTTATTAAACACTACAATAAGTTGAACCAAAGGATGCCACTGATATATGTGAAGCTCTATACATACCAGgtgtggtgttaattatttaaatttattttcattatggtc-tcttctatgttgtgtttttgcaaaagtctatatggttgtaaagtttaaatctctttttatcccagcggctgctgaaattgtaa-tatattgtttttatttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252730|gb|BG363633.1|BG363633
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAT                         ATCTTTAGGGCACTCTCTTATATTCATCGNTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: gi|15286620|gb|BI470511.1|BI470511
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: gi|208213207|gb|GE010572.1|GE010572
EST:     GGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: gi|6963904|gb|AW432597.1|AW432597
EST:     AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
EST: gi|15814589|gb|BI786864.1|BI786864
EST:     AGTTGAACCAACGTATGCCTCTGATATATGTAAAACTCTATACATACCAG                         ATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG
genomic: AGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGgtatgcttaa ... tatactgcagATCTTTAGGGCACTCTCTTATATTCATCGTTGCATTGGAGTCTGCCATCGG