1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGTGGGGAAGGGAACGGGAAGCGTAGCTCAGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttgttcactttaattgtagtgtgtggttcccttctcatatgttttctactccgaagctaatagttataactttcacattttggaagtaatttc...
species | Glycine max |
transcript | GLYMA19G38690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCAEST: gi|254330843|gb|GR842108.1|GR842108
genomic: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttg ... tttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
EST: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCAEST: gi|17152797|gb|BM142730.1|BM142730
genomic: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttg ... tttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
EST: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAG GTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
genomic: GACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttg ... tttcttgaagGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGGGAAGGGAACGGGAAGCGTAGCTCAGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGgtatgtgttgttcactttaattgtagtgtgtggttcccttctcatatgttttctactccgaagctaatagttataactttcacattttggaagtaatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctc