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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGgtagtatttttatcccagtttgttccaatttctggtctatcttgagctatttgctgttattctaggtcaggcaccataaattgaacattgtcttttgatttcag

Basic information

species Glycine max
transcript GLYMA19G37830.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37830.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g03690.t01 (Vitis vinifera), 5'ss of exon 6
ATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGgta-gtatttttatcccagtttgttccaatttctggtctatcttgagctatttgctgttattctaggtcaggcaccataaattgaacattgtcttttgatttcag
||| |||||||||| ||||| |||||| |||||||||| ||||| ||  || | ||||||||||||||||| ||||| |||||| || |||||||||||  || |    ||   |||||| | ||  |    |  || ||| |  | | | ||    ||||  || |   |  ||             |||    |||||||
ATCTATGGGGACCCAGAAGCAGCAGATGTTGTGTTTACTTCTGGTGCGAATATAGTTGTTGTTGGAATAAATATTACCACCCAAATCAAATTCACAGgtttgtgtcaacattttagtttgcttcatatctctgaatagcttcacttgtgtactc---ttctgtgtgaaataatat----------ccttctcaaaatttcag