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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGTTCCCTCTAATGAGATGATAGCATCCTTAAATCTCAAAGATGGTCAAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACGCAACAGgtttgatattcattgagaatctaagttccatatgattatatatacaacggttaaagtgttttgcttattttagcatgaaagtttaattatgcaacag

Basic information

species Glycine max
transcript GLYMA19G35930.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35930.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G099481_T01 (Zea mays), 5'ss of exon 3
AAATGTTCCCTCTAATGAGATGATAGCATCCTTAAATCTCAAAGATGGTCAAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACGCAACAGgtttg-atattcattgagaatctaagttccatatgattatatatacaacggttaaagtgttttg-cttatt-ttagcatgaaagtttaattatgcaacag
     ||||| | | |||   | ||||||| |||||||| || || || ||||| ||||| ||||| || |||||  |||| |||||||| | |||||||||||  |  |  |||    | |||  || ||||    ||| |    |     |||    ||||     ||| ||||                        
TTTGATTCCCACAAGTGAACAGGTAGCATCTTTAAATCTGAAGGAGGGCCAAAACTTGGTGACCTTTAGCTTCTCCACCAGAGTTCTTGGGAAGCAACAGgtttatacctctatttcttaccta--tttcatacttctattttaggattatgtaataaattttaatccattattag------------------------

upper sequence: GLYMA19G35930.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G09560.1 (Arabidopsis thaliana), 5'ss of exon 3
AAATGTTCCCTCTAATGAGATGATAGCATCCTTAAATCTCAAAGATGGTCAAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACGCAACAGgtttgatattcattgag--aatctaagttccatatgattatatatacaacggttaaagtgttttgcttattttagcatgaaagtt-taattatgcaacag
 ||||| ||  | |||||   ||| |||||  | ||||| ||||||||||| ||| || |||| || ||||||||  | || ||||||||||| ||||||||||| |  |  ||     | |  ||  |    | |   |   |   ||    |      ||| | || |  |  | |    ||| | ||||   |  ||
TAATGTCCCTACCAATGAACAGATCGCATCTCTGAATCTGAAAGATGGTCAGAATATGATAACATTTAGTTTCTCAACAAGAGTTCTTGGAACACAACAGgtttgttgatggttacattagttgaaaatttgaaagcacaccgaggaaaactcttctaactttagtttctaattactttttcgttgttattacttattag

upper sequence: GLYMA19G35930.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g02800.t01 (Vitis vinifera), 5'ss of exon 2
AAATGTTCCCTCTAATGAGATGATAGCATCCTTAAATCTCAAAGATGGTCAAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACGCAACAGgtttgatattcat---tgagaatctaagttccatatgattatatatacaacggttaaagtgttttgcttattt---tagcatgaaagtttaattatgcaacag
|||| | ||| | | ||||  ||| ||||| || || || ||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| |||||||  |   | | | || || ||| || | | ||| || | |     |    ||  || ||  ||    |   | | || |||   | |   ||||
AAATATCCCCACCACTGAGCAGATTGCATCTTTGAACCTAAAAGAAGGTCAAAATATGGTAACCTTCAGTTTCTCTACCAGGGTTCTTGGAACACAACAGgtctgatattggtgtctaatattcaaatttcaatttcaatatgtaaaaagtctgttggatgcctttctgtttcaactgctaaggaactttcgcttt-tgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522599|gb|BU081410.1|BU081410
EST:     AAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACGCAACAG                         GTTGATGCTCATATATACTTATGGAAGTGGAATGCAAGAATTGTAATTTCA
genomic: AAAATTTGGTAACCTTCAGTTTCTCTTCCAGGGTTCTTGGAACGCAACAGgtttgatatt ... tatgcaacagGTTGATGCTCATATATACTTATGGAAGTGGAATGCAAGAATTGTAATTTCA