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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgcctgaatagtgaatagtaaagtaaacgtttcattgtagaatgtaggagccatgtagttcacatattcttgaaattgaataatcaaatttct...

Basic information

species Glycine max
transcript GLYMA19G35710.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301012|gb|FG990112.1|FG990112
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|10844730|gb|BF067948.1|BF067948
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|254335061|gb|GR844846.1|GR844846
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|9901982|gb|BE610950.1|BE610950
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|193534902|gb|FK489066.1|FK489066
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|193665609|gb|FK609230.1|FK609230
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAAC
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAAC
EST: gi|22523592|gb|BU082403.1|BU082403
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|193635563|gb|FK582088.1|FK582088
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGTAAAT
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTG-AAAT
EST: gi|193314904|gb|FK281404.1|FK281404
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|193576426|gb|FK530793.1|FK530793
EST:     GACCTGGTGCTCCAATTATCTTCTAATTTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAAC
genomic: GACCTGGTGCTCCAATTATCTTC-AATT-GTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAAC
EST: gi|254335060|gb|GR844845.1|GR844845
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|151398751|gb|EV268622.1|EV268622
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|298189455|gb|HO037858.1|HO037858
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACGAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|8669991|gb|BE191098.1|BE191098
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|208156025|gb|GD954529.1|GD954529
EST:     CCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: CCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|17964359|gb|BM271095.1|BM271095
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|120533838|gb|EH261971.1|EH261971
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|298182727|gb|HO031462.1|HO031462
EST:     GACCTGGTGCTCCAATTATCTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
genomic: GACCTGGTGCTCCAATTATCTTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAG
EST: gi|207833133|gb|GD801810.1|GD801810
EST:     GACCTGGTGCTCCAATTTATTCTTTCAATTGT                         GTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAA
genomic: GACCTGGTGCTCCAA-TTA-TC-TTCAATTGTgtaagtatgc ... aatatttcagGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAA