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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCATTGCACCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTgtatgtttacttactgtgaatctctccttttcttttctaaattactcttgttaagttgtaactgttactatatatgtttttgttccttttcatgtgtatattggtttctcttctctctgatgaattcattgggtgtttcttctcacag

Basic information

species Glycine max
transcript GLYMA19G35370.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35370.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G007229_T01 (Zea mays), 5'ss of exon 5
CATCCATTGCACCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTgtatgtttacttactgtgaatctctccttttcttttctaaattactcttgttaa-gttgtaactgttactatatatgtttttgttccttttcatgtgtatattggtttctcttctctctgatgaattcattgggtgtttcttctcacag
|||||||| ||  |  | || || ||||| || || |||||||| ||||||||| ||||||||||||| || ||||| || ||    || ||  | ||| |||  ||| || |  |   |   ||    |||| |||  | | | | |||  ||   |||||||  || | |  ||||| |||   |                                                              
CATCCATTACATTCTGACATCCTGGCTAGCGGAAGTTTGGATCATGAAGTTCGTCTATGGGATGCTAATACTTCAGACTGTATTGGGTCACAAGACTTCCgtaatttttctca--gaagactgcttgcattctattcatagtcaattttgagaacaatgtaact--tatttttgatgttcttggggcag------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193459056|gb|FK424243.1|FK424243
EST:     CAGAGTGCATAATATCTCATCATTTCT                         ATCGTCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTG
genomic: CAGAGTGCATAATATCTCATCATTTCTgtatgtttac ... cttctcacagATCGTCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTG