Sequence
atgc intronic sequence ATGC exonic sequenceTATAGATGGTGCTAGAGCTGCGTATCAACTTGTGCATACTGAAACTTCTCCTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTGgtatgctggcttgtgaaagtgtttttatagattgtgatgacttaattttagtatttgtttacagcttttccattgattgatattgcag
Basic information
species | Glycine max |
transcript | GLYMA19G35140.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G35140.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 10
TATAGATGGTGCTAGAGCTGCGTATCAACTTGTGCATACTGAAACTTCTCCTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTGgtatgctggcttgtgaaagtgtttttatagattgtgatgacttaattttagtatttgtttaca--gcttttccattgattgatattgcag
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TATAGCTGGTGCTAGAGCTGCATACCAATTAGTGCACTCTGAAATTTCTCCTGGACTTCTTGAAGCAGTAATCAAGCATGCAAATATGGAATACCGACTAgtaagc-----ttcaatggtgattaaagaactagtataagattattatcactggttgtttcccttacatgtctcctaatcttatctgtag
upper sequence: GLYMA19G35140.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g04290.t01 (Vitis vinifera), 5'ss of exon 4
TATAGATGGTGCTAGAGCTGCGTATCAACTTGTGCATACTGAAACTTCTCCTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTGgtatgctggcttgtgaaagtgtttttatagattgtgatgacttaattttagtatttgtt-tacagcttttccattgattgatattgcag
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TATTCCAGGATCTCGGGCTGCGTATCAACTTGTGCATACTGAAATTTCACCTGGTCTACTAGAAGCAATTATTAAGCATGCAAACATGGAACATCGGCTAgtaagattgcct-tggctat-ctgttgaatatca-gacatcatgattgtgatatcaaatgttttaatttgttatttctctgttttttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9259181|gb|BE347328.1|BE347328EST: CTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTG GGAAAAATGGAAGATGCCTTCTCTTTGTATGAACATGCCATTGCTATTGAG
genomic: CTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTGgtatgctggc ... gatattgcagGGAAAAATGGAAGATGCCTTCTCTTTGTATGAACATGCCATTGCTATTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATAGATGGTGCTAGAGCTGCGTATCAACTTGTGCATACTGAAACTTCTCCTGGTCTTCTTGAAGCAATTATCAAACATGCCAATATGGAATACCGACTGgtatgctggcttgtgaaagtgtttttatagattgtgatgacttaattttagtatttgtttacagcttttccattgattgatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA