Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaattcgttttgtcttcataagtttgtttcctttcgtgcttttgttgaaaaatattgctccatgaaatgcag
Basic information
species | Glycine max |
transcript | GLYMA19G35080.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g21240.1 (Oryza sativa), 5'ss of exon 4
GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgta------taaacaattc-----gttttgtcttcataagtttgtttcctttcgtgcttttgttgaaaaatattgctccatgaaatgcag
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AAGCTACTCCAAAAGGTGTGCTCAAGCTTATGAAAGTTGATGGTTTGACAATCTATCATGTTAAGAGTCATCTGCAGgttctttttttaatctttctaaatgtcatatttgctgaaaggagacttcagttttgactttctttatctgcacttattttt--actgcag
upper sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G006477_T01 (Zea mays), 5'ss of exon 4
GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaattcgttttgtcttcataagtttgtttcctttcgtg----cttttgttgaaaaatattgctcca--tgaaatgcag
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AAGCTACTCCTAAGGGTGTGCTAAAGCTTATGAAAGTTGATGGTTTGACTATATATCATGTCAAAAGCCACCTGCAGgtttg--ctgtttagctt-tctaagtagtattcttgcccaaaggaggccttttcattttcttatttgaactcgtttgtgttgcag
upper sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G28610.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaattcgttttgtcttcataagtttgtttcctttcgtgcttttgttgaaaaatattgctccatgaaatgcag
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GAGCTACTCCTAAAGGGGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATATATCATGTTAAAAGCCATTTACAGgttcttactattctttagttccctgctaatgcatataattgtcttctaatattagattgtgtttttcag----------
upper sequence: GLYMA19G35080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g04120.t01 (Vitis vinifera), 5'ss of exon 4
GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaattcgtt-ttgtcttcataagtttgtttcctttcgtgct---tttgttgaaa--------aatattgctccatgaaatgcag
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GAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGgtatatatacttttttactttcatctagaaatgagtccctatcatgatggactttttaaggtttcttgtgatcttgctgaattgaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7145709|gb|AW507631.1|AW507631EST: TCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAG AAGTACAGGACAGCTAGATATAGACCTGAGTCATCTGAAG
genomic: TCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaa ... tgaaatgcagAAGTACAGGACAGCTAGATATAGACCTGAGTCATCTGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGATGGATTAACTATATACCATGTTAAAAGCCACCTACAGgtataaacaattcgttttgtcttcataagtttgtttcctttcgtgcttttgttgaaaaatattgctccatgaaatgcag
- - - - - - - - - - - - - - - - - - - GATGGA