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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGgtgattattgagaagaaatagttgttgaaagaattttattatttttaatatctttgacttcaagtgatttaataaattcagtgatgatcag

Basic information

species Glycine max
transcript GLYMA19G34360.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34360.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0141g00220.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGgtgattattgagaagaaatagttgttgaaagaattttattatttttaatatctttgacttcaagtgatttaataaattcagtgatgatcag-
|| ||||||||||||||| |||| ||||| |||||||| |||||||| ||||| ||||| |||||| ||||||||||||| || |   | |||||    |        |   |||| |  |    || ||||| | |  | ||   ||  |   ||| |   |  | |  
GTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGgtaatcaacaacaagaagatatataaacttgccatttaattctccccatgtctttaattgtaggtttctttcttttttctgctttttttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317152|gb|GR826097.1|GR826097
EST:     CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAG                         GAAGAAGGTGGTGAAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTC
genomic: CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGgtgattattg ... tgatgatcagGAAGAAGGTGGTGAA-GGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTC
EST: gi|19453220|gb|BM954630.1|BM954630
EST:     CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAG                         GAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTCA
genomic: CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGgtgattattg ... tgatgatcagGAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTCA
EST: gi|21677257|gb|BQ629608.1|BQ629608
EST:     CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAG                         GAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTCA
genomic: CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGgtgattattg ... tgatgatcagGAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTCA
EST: gi|21888332|gb|BQ741545.1|BQ741545
EST:     CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAG                         GAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTCA
genomic: CCGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGgtgattattg ... tgatgatcagGAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCATGGGACAAGTGGTCA