Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaatttttgttttaagaattcacagcagatggagttgtattaatgttcattcaattcaatcacaaggcttgcaaacatttcag

Basic information

species Glycine max
transcript GLYMA19G34180.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193350465|gb|FK316251.1|FK316251
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG                         GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACC-AAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193708580|gb|FK644972.1|FK644972
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG                         GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207758641|gb|GD728687.1|GD728687
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG                         GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAA-G
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|193358947|gb|FK325377.1|FK325377
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG                         GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
EST: gi|207830641|gb|GD802487.1|GD802487
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG                         GTAATGCTAAAAATG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATG
EST: gi|208199691|gb|GD999946.1|GD999946
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG                         GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAA
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAA
EST: gi|193363294|gb|FK325782.1|FK325782
EST:     GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG                         GTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG
genomic: GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAGgtaaattttt ... aacatttcagGTAATGCTAAAAATGAAGAGCAGACATGTTGCAGGAACCATTACCAAAAAG