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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAGTAGGATAAAGTGGAATTTCACTAAGTTTTTGGTTGACAAGGAAGGGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctctctctatttctctccatggagtgcatatgtgagattatgttcgttccatttggattttgacgtctcagccttgaacaatgacgaatcctg...

Basic information

species Glycine max
transcript GLYMA19G33650.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171406|gb|HO016438.1|HO016438
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGGGG
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGGGG
EST: gi|9819421|gb|BE554934.1|BE554934
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATT
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATT
EST: gi|10709776|gb|BF009500.1|BF009500
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
EST: gi|15663056|gb|BI700427.1|BI700427
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGGGGAGGCTTGAAA
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGGGGAGGCTTGAAA
EST: gi|9820763|gb|BE556273.1|BE556273
EST:     GCATGTCCTCGCTCGTTATGGGCCAACCACCTCACCGTTGTCCATTTGAA                         A-TGACATCAAGACAGCATT
genomic: GCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATT-GAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATT
EST: gi|208145473|gb|GD940872.1|GD940872
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
EST: gi|207766244|gb|GD737774.1|GD737774
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
EST: gi|298173934|gb|HO017270.1|HO017270
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGG
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGG
EST: gi|151397536|gb|EV267409.1|EV267409
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGGGGAGGCTTGAAAGACTCTACAATCACTT
EST: gi|207802831|gb|GD776144.1|GD776144
EST:     GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAA                         AATGACATCAAGACAGCATTGGGGGAGGCTTGAAAG
genomic: GGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctc ... gcctttacagAATGACATCAAGACAGCATTGGGGGAGGCTTGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTAGTAGGATAAAGTGGAATTTCACTAAGTTTTTGGTTGACAAGGAAGGGCATGTCCTCGCTCGTTATGGTCCAACCACCTCACCGTTGTCCATTGAAgtacaatctctctctatttctctccatggagtgcatatgtgagattatgttcgttccatttggattttgacgtctcagccttgaacaatgacgaatcctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctcc