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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAACTACTAATCACTATTCAAGTCTTCAAATAACCACAACAAGAGAAGGGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaataacaacaccttataaatcaacaaatgtagctattgaatttatcgaaactctttggatcaacaatgatagagtaactccattatcatctc...

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G097277_T01 (Zea mays), 5'ss of exon 5
AAAAACTACTAATCACTATTCAAGTCTTCAAATAACCACAACAAGAGAAGGGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgt----tagtagaat--aacaacaccttataaatcaacaaatgtagctattg--aatttatcgaaactctttggatcaacaatgatagagtaact--ccattatcatctc----------------------------------------------------------------------------------------
 ||    | |||   | | |||||  ||||| | || ||||  | |   |||      | | | || ||||| |||||||||||| ||||||||||||||||    || ||| ||  |        || |   |   | | | |  ||| ||  | || ||    ||   |||||| || |||| || | ||| |      |  |    |                                                                                        
CAACCAAAATAACAGCAACTCAAGGTTTCAACTTACAACAAGTAAAAGCGGGGTAGTTTGGCTTGATCAAGTATCAGTTATGCCAATGGACACTTACATGgtatactactagcatccagttctgttttttgctttctctatttt--ctagtggcacttaattctgaccggttggattaa-aatgtta-attaattaattgctgccgatccaactatacagttaaagtttattttactcgaatgtagttgtccagggatggtctgactatgacttttattcattaccacatgtctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208242377|gb|GE037861.1|GE037861
EST:     GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG                         GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: gi|193315414|gb|FK278456.1|FK278456
EST:     GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG                         GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: gi|193306339|gb|FK273320.1|FK273320
EST:     GGAGCTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG                         GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAG
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAG
EST: gi|193644926|gb|FK588774.1|FK588774
EST:     GTCAGTTATGCCATTGGACACTTACATG                         GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
genomic: GTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: gi|193658776|gb|FK604701.1|FK604701
EST:     GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG                         GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
EST: gi|193605534|gb|FK557324.1|FK557324
EST:     GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATG                         GGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA
genomic: GGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGgttagtagaa ... tttgaaacagGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCA