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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGATATTGGGGAATATGGGCGGATGAGTAAGgtaacatattagtattttgtgcaatggtgtaggttgttttccagcttaatttgaatgtttctgtatctgtatctattggtatccatgagcattgagtgatttattgattttgttgaaccctgtcag

Basic information

species Glycine max
transcript GLYMA19G30100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g17180.1 (Oryza sativa), 5'ss of exon 5
AGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGATATTGGGGAATATGGGCGGATGAGTAAGgtaacatattagtattttgtgcaatggtgtaggttgttttccagcttaatttgaatgtttctgtatctgtatctattggtatccatgagcattgagtgatttattgattttgttgaaccctgtcag
|||||||||||||||||||| || |||||||| || || |  ||||| || ||||| ||||| |||||||| |||||  | ||| |  | ||| |  | |    | | ||  ||| ||  ||  |       || || ||  | | | |  | ||| |      |  |                                 
AGATTATGGTTTAAGACAAACCTGAAGCTTTGCAAAATTTGGTTTGACATGGGGGAGTATGGCCGGATGAGCAAGgtg-cttat-acaagtttctctagtcaattggttttctttacatattc-tgcagtcattactctaattat-tttgctcgtaacttcttcctgtag-------------------------------

upper sequence: GLYMA19G30100.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 5'ss of exon 5
AGATTATGGTTTAAGACAAATCTTAAGCTTTGTAAGATCTTCTTTGATATTGGGGAATATGGGCGGATGAGTAAGgtaacatattagtattttgtgcaatggtgtaggttgttttccagcttaatttgaatgtttctgtatctgtatctattggtatccatgagcattgagtgatttattgattttgttgaaccctgt-cag
||||| |||||||||||||||||||||||||| ||||| |  || || || || ||||||||||| ||||||||||||   | ||||   | | ||    |    | |  |  |||| |||   ||   ||||  |  ||| | ||| ||      |  || |       || || ||  ||||||  || || |||  |||
AGATTGTGGTTTAAGACAAATCTTAAGCTTTGCAAGATTTGGTTCGACATGGGTGAATATGGGCGAATGAGTAAGgtatttttttagccctgtttg----gtcagatgacgcattcctgctctgttctcatgtgcccttatatatatgtaaaacattttatta-----tggtaatctaaggatttt--tggacactgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319385|gb|FK009927.1|FK009927
EST:     AGCTTTGTAAGATCTTCTTTGATATTGGGGAATATGGGCGGATGAGTAAG                         ATATTGAAGGAACTTCACAAATCTTGTC
genomic: AGCTTTGTAAGATCTTCTTTGATATTGGGGAATATGGGCGGATGAGTAAGgtaacatatt ... accctgtcagATATTGAAGGAACTTCACAAATCTTGTC