Sequence
atgc intronic sequence ATGC exonic sequenceGGACGTTTCAAGTACCAACCTGGCGAGGTTAGGGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACCCCAATGTTTCAAgtatatcattaagggcacactgttctgttgttcatcatcaagaggaaatttcttttgtggaattctgtgttactaatttgtttgcttcttgtcgctgaag
Basic information
species | Glycine max |
transcript | GLYMA19G29720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G17770.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTTTCAAGTACCAACCTGGCGAGGTTAGGGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACCCCAATGTTTCAAgtatatcattaagggcacactgttctgttgttcatcatcaagaggaaatttcttttgtggaattctgtgttactaatttgtt-tgcttcttgtcgctgaag
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GGTAGGTTCAAGTATCAACCAGGTCAGTTTAGGGCATTTGGAATGCTTGCTGGAGGTTCAGGCATCACTCCCATGTTCCAAgtatgtct-----gatacatt----tgc-gtttgatatcg--------tttttgaagccaatgtatatgttttaaacgcgttatatttcttaattgtgaag
upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTTTCAAGTACCAACCTGGCGAGGTTAGGGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACCCCAATGTTTCAAgtatatcattaagggcacactgt---tctgttgttcatcatcaagaggaa-atttcttttgtgg-aattctgtgttactaatttgttt-gcttcttgtcgctgaag----------------------------------
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GGGCGTTTCAGGTATCAAGTTGGCCAAGTTAGGGCATTTGGGATGCTTGCTGGAGGTTCTGGAATTACACCAATGTTCCAAgtaagtatttgagaaattgttttatatttggtacatgcttttaataagagtgcttgacctgtttcaattttgaactagtatctttcatagagtttaggtgataatgcgtagtggttgttccttttctgcccacaattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51336831|gb|CO980697.1|CO980697EST: GGGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACCCCAATGTTTCAA GTTGCTAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
genomic: GGGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACCCCAATGTTTCAAgtatatcatt ... gtcgctgaagGTTGCTAGAGCTATATTAGAAAACCCTAATGACAGGACCAAAGTACATCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACGTTTCAAGTACCAACCTGGCGAGGTTAGGGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACCCCAATGTTTCAAgtatatcattaagggcacactgttctgttgttcatcatcaagaggaaatttcttttgtggaattctgtgttactaatttgtttgcttcttgtcgctgaag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG