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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttccatctttttattgattttattattgcttgtagggtattttctataacctatatagggcctcatagttgttgaagataat...

Basic information

species Glycine max
transcript GLYMA19G29580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G109651_T01 (Zea mays), 5'ss of exon 9
ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttccatctttttattgattttattattgcttgtagggtattttctataacctatatagggcctcatagttgttga--agataat---------------------------
|| ||||||||||| || |||||||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | |||||||||||| | | |  |  |        |   | | |||  |       || | |  |||| |   |   | |  ||   |||  |  ||  ||      | ||                           
ACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaagatgcacatgagagatctcgaacttattcaacggcctattat-gtatattcttctttgtcaacctacaaccttttgttttatgttttagtgatggcatcaactatgttttacgtttgcag

upper sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G096389_T03 (Zea mays), 5'ss of exon 10
ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagtt---atgct----aaagttttccatctttttattgattttattattgcttgtagggtattttctataacctata---tagggcctcatagtt-gttgaagataat---------------------
|| |||||||| || ||||||||||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | ||||||||||||    |||||    | |  | || | ||| ||    |  |   ||||   | ||   | |||| |   ||||||    |   |  | ||| ||   ||| |  |                       
ACTGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcgatattatgtatattctcttttgt-cgacctatgaccttctgttttatactttagtgatggcatcaactatgttttacatttgtag

upper sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G093422_T01 (Zea mays), 5'ss of exon 2
-------------ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagtt---atgct----aaagttttccatctttttattgattttattattgcttgtagggtattttctataacctata---tagggcctcatagtt-gttgaagataat---------------------
             ||  ||||||| || ||||||||||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | ||||||||||||    |||||    | |  | || | ||| ||    |  | | ||||   | ||   | |||| |   ||||||    |   |  | ||| ||   ||| |  |                       
CTCTATGTTCCAGACTAGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcaatattatgtatattctcttttgt-cgacctatgaccttctgttttatactttagtgatggcatcaactatgttttacatttgtag

upper sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G150362_T01 (Zea mays), 5'ss of exon 3
ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagtt---atgct----aaagttttccatctttttattgattttattattgcttgtagggtattttctataacctata---tagggcctcatagtt-gttgaagataat---------------------
|| |||||||| || ||| ||||||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | ||||||||||||    |||||    | |  | || | ||| ||    |  |   ||||   | ||   | |||| |   ||||||    |   |  | ||| ||   ||| |  |                       
ACTGGGAGGAAGCCAAGCAGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcgatattatgtatattctcttttgt-cgacctatgaccttctgttttatattttagtgatggcatcaactatgttttacatttgtag

upper sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G09360.1 (Arabidopsis thaliana), 5'ss of exon 10
ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttcc---atctttttattgattttattattgcttgtagggtattttctataacctatatagggcctcatagttgttgaagataat-----
|| ||  |||| ||||| ||| |||| || |||||| | |||| | |||||||| |||||||||| |||||||||||| | ||||||||||| |||| |    | |      || || || | |||   |  |    |  |   |  |||  | | ||  || |||  |    | | |||      || |     
ACCGGCCGGAAGCCTAGTGGAATATGTGGAGCAGCACTTTACACAGCTGCTCTTTCTCATGGTATCAAGTGCTCTAAGACAGATATTgtaagatatgattggctataaagaaatattgttttagatgagaggaaaagtgttttagcctttaat-tcactaatttagtactgatttggtgtgttttctacttccag

upper sequence: GLYMA19G29580.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0056g01250.t01 (Vitis vinifera), 5'ss of exon 11
ACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttccatctttttattgattttattattgcttgtagggtattttctataacctatatagggcctcatagttgttgaagataat-
|||||||| ||||| || || ||||| |||||||| || ||||||||||| ||| |  ||||| | |||||||| ||| | || ||||||||| |  || | | | |     ||     ||| | | || | | | | ||   ||| |||   |    |  |    || |   ||  | |   | || 
ACAGGGAGAAAACCCAGTGGCTTATGTGGTGCAGCGTTGTACATATCTGCACTTTCATATGGTTTAAAGTGCTCCAAGACAGACATTgtaagtcaaactcatgctctgttgtttcactgtgactattttttggttagaagacaattctcttctattgcttgaaatgcttaatatt-ctaatcttcatc