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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCCAATGACCTTGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttattaaacatgcatttcatagtaaattttgggagactattacctataatatagttatctgatgtttctattgtgtaaatgcag

Basic information

species Glycine max
transcript GLYMA19G29180.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311463|gb|BG405114.1|BG405114
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|6566748|gb|AW234380.1|AW234380
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|209698329|gb|BW678060.1|BW678060
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|8283740|gb|BE021299.1|BE021299
EST:     CTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: CTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|6069807|gb|AW099413.1|AW099413
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|213588272|gb|DB981084.1|DB981084
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|15662108|gb|BI699479.1|BI699479
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|14990337|gb|BI316010.1|BI316010
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|9986863|gb|BE660971.1|BE660971
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|10237721|gb|BE806609.1|BE806609
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
EST: gi|15812912|gb|BI785178.1|BI785178
EST:     TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAG                         ATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC
genomic: TGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttatt ... gtaaatgcagATAAGCTTGTTGTGTCCACCTCCTCCTCCCTTCTTCACACTGCTGTTGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCCAATGACCTTGCTGCTTCTCTCACTACATTGCAGGGTCTTGAGGGCATTGTGGGCAAAGgtattttattaaacatgcatttcatagtaaattttgggagactattacctataatatagttatctgatgtttctattgtgtaaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG