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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGgtctttttgatgccttacattttagcagttcttcctccccctgcctcaacacctatctctctagttttcctgtcttttacattgcaaaaatgtgaatttctctagttacaaatttaataattttttccttcttgcag

Basic information

species Glycine max
transcript GLYMA19G27500.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27500.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 6
TGACATTTTGGAAGCAACATATCCTGCTGTTGCAAAGAGGTTACATAGTGATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGgtctttttgatgccttacattttagcagttcttcctccccctgcctcaacacctatctctctagttttcctgtcttttacattgcaaaaatgtgaatttctctagttacaaatttaataattttttccttcttgcag
 ||||| ||||||||||| || || |||||||||||||||||| ||| ||||||| ||  ||||||||| ||||| |||||||| || ||||||||||||||        |||  |  | ||||   |||     ||||  |  || |  |  |||     |   ||    |  | |            || |  |||  |||| || ||                           
AGACATCTTGGAAGCAACTTACCCAGCTGTTGCAAAGAGGTTATATAATGATTGGATTAATGATCCTGCAATTCCCATTGTTACCGGTTTCCTTGGAAAGgttcc-----tgctctgaagtttaatggtttcaattcccagtaact-agaatttatgcacatgagttctaggaatat-----------gatttatattcttctaattgcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311816|gb|BG405467.1|BG405467
EST:     ATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAG                         GCACGAAAATCATGTGCGGTGACAACATTGGGTAGAGGGTG-AAGTGATTT
genomic: ATTGGGTTTCTGATCCTGCTATTCCAATTGTTACAGGCTTCCTTGGAAAGgtctttttga ... cttcttgcagGCACGAAAATCATGTGCGGTGACAACATTGGGTAGAGG-TGGAAGTGATTT