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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttacacaattgctagtcaatgatagggttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccag

Basic information

species Glycine max
transcript GLYMA19G27380.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g10810.1 (Oryza sativa), 5'ss of exon 5
GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagt---ttacacaattgcta--gtcaatgatagggttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccag
|||| || || ||||| || ||||| || ||||| ||||| || || ||||||||||| ||||||||||| |||||||||||||||||| | || |||||||||||   || |   |||  ||  |||| |   |  |   |||| | |      |  ||||   |  ||  |||    ||| |      ||  |||
GTCTATTCACTCGTGGACTGCCCCTACGTATTGTCATGATCGGTACCCTTACTGGAGCTCAATGGGGAATTTATGATGCATTCAAAGTCATGGTTGGATTgtaagtatctttctttattattactgtcattagaacagcgtcattatctttcgattgaatcagtaaattgagaattcactttataat---ttaacag

upper sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g52860.1 (Oryza sativa), 5'ss of exon 5
GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac---acaattgctagtcaatgatagggttccattctttcat--tccttcatcatggacgtgctaatgagattttttcccccttcccag
| || || ||  | || || ||||| || |||||||||||||||||||||||||| || |||||||| || |||||||| || |||||| | || ||| ||||||| | |       |||||| | |||   |  |||  |   ||  |      || |  |   | |  || ||| |    |||     ||  |||
GCCTTTTCACTAGAGGACTGCCCCTTCGTATTGTTATGATTGGAACTCTTACTGGTGCTCAATGGGGTATTTATGATGCTTTTAAAGTCATGGTTGGACTgtaagtattccttttgcttgctaattaatttaattgttagaacattaaaaggcttttgaggaatcaaggacttatg-gcccatttatatattttcag

upper sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G152827_T01 (Zea mays), 5'ss of exon 5
GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttacacaattgctag-tcaatgatagg-gttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccag------
||||||| ||  | || || || || || || || |||||||| || |||||||| || || |||||||| || ||||||||||||||  | || ||| ||| ||| |       | ||   | |   |||       ||   |   | |||||||    |  |   | ||  |  | |||    | ||  | |      
GTCTCTTCACTAGAGGACTTCCTCTTCGTATCGTCATGATTGGTACCCTTACTGGTGCTCAGTGGGGAATTTACGATGCATTCAAAGTGATGGTTGGACTgtgagtatctctctctactgccttaggaataaccaccgcaacatccaaatccttca--gagagctcaccaactaattctttgtttcgttttctgtttcag

upper sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G015401_T01 (Zea mays), 5'ss of exon 5
GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagt---ttacacaattgc--tagtcaatgatagggttccattctttcattc--cttcatcatgga-cgtgctaatgagattttttcccccttcccag-----
||||||| ||  | || || || || || || || |||||||| || |||||||| || || |||||||| || ||||||||||||||  | || ||| ||| |||   |  | | | |||  |||  |    |      |||      ||| |   | | |||  || |   | ||  |  | |||    | || |        
GTCTCTTCACTAGAGGACTTCCTCTTCGTATCGTCATGATTGGTACCCTTACTGGTGCTCAGTGGGGAATTTACGATGCATTCAAAGTGATGGTTGGACTgtgagtgtctctctctactgccttaggaataagtgaatagccaccgcaacatccaaatccttcagagagctcaccaactaattctttgtttcgtttctgtttcag

upper sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ31006 (Selaginella moellendorffii), 5'ss of exon 5
GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttacacaattgctagtcaatgatagggttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccag
 |||||| || || || || || || || || || ||||||||||| || |||||||| || |||||||| || || || |||||||||||||| ||| |||||||||       |  |      ||      |  ||    |  |||||                                          
CTCTCTTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACACTCACTGGAGCACAGTGGGGAATCTACGACGCCTTCAAAGTCTTCGTTGGACTgtaagtttctcgctctcatctcttgtggggaaatctcaaatctctattccag----------------------------------------

upper sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ34707 (Selaginella moellendorffii), 5'ss of exon 5
GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttacacaattgctagtcaatgatagggttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccag
 |||||| || || || || || || || || || ||||||||||| || |||||||| || |||||||| || || || |||||||||||||| ||| ||||||||| | |  |  ||  |   ||      |  ||    |  |||||                                          
CTCTCTTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACACTCACTGGAGCACAGTGGGGAATCTACGACGCCTTCAAAGTCTTCGTTGGACTgtaagttt-ctcgctctctctt--gtggggaaatctcaaatctctattccag----------------------------------------

upper sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ34706 (Selaginella moellendorffii), 5'ss of exon 5
GTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac-acaattgctagtcaatgatagggttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccag
 |||| | || || || || || || || || || |||||||||||||| |||||||| || |||| ||| || || || |||||||||||||| ||| |||||||||    | ||| ||   |         ||||     | || |  ||    |     | | | |                        
CTCTCGTCACCCGGGGGCTACCGCTGCGTATCGTGATGATTGGAACTCTCACTGGAGCGCAGTGGGTAATCTACGACGCCTTCAAAGTCTTCGTTGGACTgtaagtttcttgctatttctctccttgtgggaagttctcaaatctcctctctcgtgctcttccatcccag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193314652|gb|FK278338.1|FK278338
EST:     TGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: TGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|298168584|gb|HO009514.1|HO009514
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTG
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTG
EST: gi|213596228|gb|DB981816.1|DB981816
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|192295707|gb|FG990561.1|FG990561
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATCCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|213597197|gb|DB981589.1|DB981589
EST:     CTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTAC-TCGACGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: CTGGAGCCCAATGGGGAATATATGATGCATTCAAAGT-CTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|22927800|gb|BU544939.1|BU544939
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|58024028|gb|CX710769.1|CX710769
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|207761334|gb|GD733719.1|GD733719
EST:     GAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: GAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|9901819|gb|BE610787.1|BE610787
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCTTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|254314924|gb|GR829917.1|GR829917
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA