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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCGGGACATAGACAAGTACACAGCTGGATTTCCACGTGGTGATGGTCAAGGCCATGCAAATTTATTCAAAGCTGTTAAGCATTACTTACCTGGTCCTgtaagtatgttccctggttctgaagaaaaaaaatgatgaatttgggacattttaatgatttttggaggggaaaagttaattggtgtaactttccatttcc...

Basic information

species Glycine max
transcript GLYMA19G25900.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990559|gb|BI316232.1|BI316232
EST:     AAGGCCATGCAAATTTATTCAAAGCTGTTAAGCATTACTTACCTGGTCCT                         TACACATTCATCCTAATTGCAAGCAAAGAATTACCTAAGCAATGCATAAGG
genomic: AAGGCCATGCAAATTTATTCAAAGCTGTTAAGCATTACTTACCTGGTCCTgtaagtatgt ... tgagtgacagTACACATTCATCCTAATTGCAAGCAAAGAATTACCTAAGCAATGCATAAGG
EST: gi|13181562|gb|BG352902.1|BG352902
EST:     AGGCCATGCCAATTTATTCAAAGCTTGT-AAGCATTACTTACCTGGTCCT                         TTACAC-TTCATCCTAATT
genomic: AGGCCATGCAAATTTATTCAAAGCT-GTTAAGCATTACTTACCTGGTCCTgtaagtatgt ... tgagtgacagT-ACACATTCATCCTAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCGGGACATAGACAAGTACACAGCTGGATTTCCACGTGGTGATGGTCAAGGCCATGCAAATTTATTCAAAGCTGTTAAGCATTACTTACCTGGTCCTgtaagtatgttccctggttctgaagaaaaaaaatgatgaatttgggacattttaatgatttttggaggggaaaagttaattggtgtaactttccatttcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT