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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCACAATGTTCGTTGGTATTACCTTCCCATTCTTTAGTGGTCTCCTAGGATTTTTTGGGGGATTTGCTTTTGCACCAACAACATACTTTgtaagtcaaataaattagtaaatttaatcacacagtaatcttgcttaaattccttaacggttcattttcttccttaaattttcag

Basic information

species Glycine max
transcript GLYMA19G24520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24520.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G127294_T01 (Zea mays), 5'ss of exon 6
CATTCACAATGTTCGTTGGTATTACCTTCCCATTCTTTAGTGGTCTCCTAGGATTTTTTGGGGGATTTGCTTTTGCACCAACAACATACTTTgtaagt-caaataaattagtaaa---tttaatcac-acagtaatcttgcttaaattccttaac-----ggttcattttcttcc--ttaaattttcag----------------------------------------------------------------------------
  || ||||||||| | |  || |||||||| |||||| |||   | ||  | || ||||| |||||||| ||||||||||| ||||| ||||||||  |  ||  ||   |  |   |||  ||   |  ||||  ||    |   |  | | |     | || || |||||||  ||  |||   |                                                                             
GGTTTACAATGTTCATAGCCATCACCTTCCCTTTCTTTGGTGCATTGCTCAGCTTCTTTGGTGGATTTGCCTTTGCACCAACGACATATTTTgtaagcacccattgatccctttacctttttgtcgtgatggtaactttttgcagtattttgatcaccaagatttatgttcttcctattcgattggtaacaaatcttatgatgaatcgttaatgtatataatcaagcgtcgaattataacatgagagttgacttggttctggcag

upper sequence: GLYMA19G24520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 6
CATTCACAATGTTCGTTGGTATTACCTTCCCATTCTTTAGTGGTCTCCTAGGATTTTTTGGGGGATTTGCTTTTGCACCAACAACATACTTTgtaagt-caaataaattagtaaatt-taatc--acacagtaatcttgc--ttaaattccttaacggttcattt-----tcttccttaaattttcag
||||||||||||| || || || || ||||| ||||||||||| || ||  | || ||||| |||||||||||||| || ||||| |||||||||||  ||      || | | ||| ||||   |   | || || |||  | |   | | ||    | | |||     || |  |    |  ||||
CATTCACAATGTTTGTCGGCATCACATTCCCGTTCTTTAGTGGCCTTCTGAGTTTCTTTGGAGGATTTGCTTTTGCGCCTACAACGTACTTTgtaagcacagggctcttggcagattgtaattcaatttactagtcctgcaataaggattcatactaatgcttttgtcactcattttatgttcctcag