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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCTTGTTTGGCCTTTCATACGTTATTGCAGCTTCGGCCATTTATGATGAATACAGCAATGATATTCTTGACATGCCGGAAGGATCCTGCTTCCCTAGgtttttttttctgctccaatgtatttatcactgtgacttgcaattaaggcttttatattatgttcttatgcatttgatatctgaattctaatag

Basic information

species Glycine max
transcript GLYMA19G23550.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G23550.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0219g00190.t01 (Vitis vinifera), 5'ss of exon 6
CCTTCTTGTTTGGCCTTTCATACGTTATTGCAGCTTCGGCCATTTATGATGAATACAGCAATGATATTCTTGACATGCCGGAAGGATCCTGCTTCCCTAGgtttttttttctgctccaatgtatttatcactgtgacttgcaattaaggcttttatattatgttcttatgcatttgatatctgaatt-ctaatag--------
|  | | || ||| ||||  ||  || ||||  ||    | |||||||||||||| ||||||||| | |||||||||| |||||| |||||||| || ||||  |     |  |||  |    ||||    |   |  ||   ||  |  || |   |  | |  || ||    || | |   | || || | |         
CACTTTGGTATGGGCTTTGTTATATTGTTGCTTCTGTATCAATTTATGATGAATATAGCAATGATGTGCTTGACATGCTGGAAGGGTCCTGCTTTCCAAGgtgctcc--accactcttaacactttaaagtttccatgtggggttgggttttatgcttcttatagttctgagaatgttctaaaactttctgagaaattaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411563|gb|EV281374.1|EV281374
EST:     GAATACAGCAATGATATTCTTGACATGCCGGAAGGATCCTGCTTCCCTAG                         GCCCCAGTTTCGAAAAGATGTTGATGCATCGCAAAGAACTTCTAATTCAAA
genomic: GAATACAGCAATGATATTCTTGACATGCCGGAAGGATCCTGCTTCCCTAGgttttttttt ... attctaatagGCCCCAGTTTCGAAAAGATGTTGATGCATCGCAAAGAACTTCTAATTCAAA