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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttgctctattaacattttaaataattatgcttattgctgtaacttttgcacattctactaaagttgtcttatatggaaaattgctagactacg...

Basic information

species Glycine max
transcript GLYMA19G22530.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g70960.1 (Oryza sativa), 5'ss of exon 5
GCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttgctc-tattaacattttaaataatt--atgcttattgc----tgtaacttttgcacattctactaaagttgtcttatatggaaaattgctagactacg
||  | |||||||| ||||||||||| ||| | ||||| || ||||||||||| || |||||||||||||||||||   |  ||| ||   |   |||   || ||   || |  | ||    ||||  |||  || ||  | ||     | ||| || ||  | |||  ||       
GCCAGGCACAATGGCCAGAACTATGTTTTTGCTCTTCTCACTGGTTATCGTGATCCACCTGCTGGTGTTTCGgtaaccctctctcatacatattgttttgttattttagtgttggtcgctacttgtaggtttcacatatgattctctgagtatctgatttgttagatttgta-------

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g23620.1 (Oryza sativa), 5'ss of exon 6
GCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttgctct-----attaacattttaaataattatgcttattgctgtaacttttgcacattctactaaagttgtcttatatggaaaattgctagactacg
||  | |||||||| ||||||||||||||| | ||||| || ||||| ||||| || ||||| ||||||  ||||||| |   |||     | | | |  |||   | ||    ||  | ||      | ||   ||    || || ||   ||| |   || |  | |   ||   
GCAAGGCACAATGGCCAGAACTATGTGTTTGCTCTTCTTACTGGTTACCGTGATCCACCTGCCGGTGTTCAGgtaaatctcattctctgtcagttataccttaggcatttgcagttgctacttg---ctatgtgtatcgcccttaa-ttcctttacaaacaataaagatgctcttg-

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G40810.2 (Arabidopsis thaliana), 5'ss of exon 4
GCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttgctc-tattaacattttaaataattatgcttattgctgtaactt-ttgcacattctactaaagttgtcttatatggaaaattgctagactacg
|| || |||||||| || || ||||| ||| | ||  | || ||||||||||| |||||||||||  |||||||||||||  ||| ||||     |||| |   || |  |||   ||  || || ||| |  ||      || |  || |   ||   ||  | || |     
GCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGgtaaatttctctcctatttttgctttagac--ttgttattacaacttcaaattgttggaagtta----gaaataatcctg--tgactaacgggtacag----

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0171g00330.t01 (Vitis vinifera), 5'ss of exon 5
GCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttgctctattaacattttaaataattatgcttattgctgtaactt---ttgcacattctactaaagttgtcttatatggaaaattgctagactacg
||||||||||||||||| |||||||| ||| | || ||||| ||||| ||||| || ||||||||  |||||||||||| | ||  | | |   | | | |  | ||| ||| |  ||| ||      | || | | | || |     | | | ||    | ||  ||   |   
GCTCGCCACAATGGTCAAAACTATGTATTTGCACTGCTAACTGGTTACCGTGATCCACCTGCTGGCATTTCGgtaaattcttcttcactgatgatattagttttcatggttaattttgtgacacagacttcataattttcttataaactttaacatcacgactttgtatttt---

upper sequence: GLYMA19G22530.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g05950.t01 (Vitis vinifera), 5'ss of exon 4
GCTCGCCACAATGGTCAGAACTATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttgctctattaacattttaaataattatgcttattgctgtaacttttgcacattctactaaagttgtct--tatatggaaaattgctagactacg-
|| ||||||||||||||||| ||||| ||| | ||| |||| ||||| ||||| ||||| ||||||||||| |||| || |  |    | | ||| || ||||  ||| | || |     || |  | ||      || |  || |||   ||||    | ||    ||  | | 
GCCCGCCACAATGGTCAGAATTATGTATTTGCTCTTTTAACTGGTTACCGTGATCCTCCAGCTGGTGTTTCAgtaagttct--ttatctcagattatatataaacatg-taatagaacatacctaggtactgaaatctgagtttatctgccatattttcagttatgtgatgatgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295297|gb|FG985951.1|FG985951
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAAGGACTGCACTATAATCCTTAT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAA-GGACTGCACTATAATCCTTAT
EST: gi|21888018|gb|BQ741231.1|BQ741231
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|21595027|gb|BQ610344.1|BQ610344
EST:     ATGTGTTTGCACTTCTAACTGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|13479755|gb|BG509098.1|BG509098
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|17401890|gb|BM178672.1|BM178672
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|192323087|gb|FK017373.1|FK017373
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|151407875|gb|EV277690.1|EV277690
EST:     ATGTGCTTTCCCTTCTGACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCGGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|151402509|gb|EV272322.1|EV272322
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCTTGCTGGTGTTTCG                         ATTAGAGAAG-ACTGCACTATA-TCCTTATTTTC-TGGTGGGGCTATTG
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTG
EST: gi|192306981|gb|FG999986.1|FG999986
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|192306980|gb|FG999985.1|FG999985
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGC
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAA-GGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGC
EST: gi|14008807|gb|BG725411.1|BG725411
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
EST: gi|9203731|gb|BE329955.1|BE329955
EST:     ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCG                         ATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT
genomic: ATGTGTTTTCCCTTCTAACCGGTTATCGTGACCCTCCTGCTGGTGTTTCGgtaaattttg ... aaaaatgtagATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCTATTGCT