1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGACTAGTATAGGGAAAATGTTCTCCAGTGAGATGACTTTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAGgttctgcatcattacttttcttttaaattgagtatgttttcagtgcttgtaaatataattgaaattgattttagtcctccaaaatttatgtattttggtc...
species | Glycine max |
transcript | GLYMA19G06540.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAG GCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGTEST: gi|9903070|gb|BE612038.1|BE612038
genomic: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAGgttctgcatc ... ctgtatgcagGCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGT
EST: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAG GCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGTEST: gi|192310708|gb|FK001132.1|FK001132
genomic: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAGgttctgcatc ... ctgtatgcagGCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGT
EST: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAG GCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGTEST: gi|209698950|gb|BW664281.1|BW664281
genomic: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAGgttctgcatc ... ctgtatgcagGCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGT
EST: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAG GCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGT
genomic: TTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAGgttctgcatc ... ctgtatgcagGCATGTTTTTCTTGATGGATTAGAGAATCAGATAGAGACTCGGCATTCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGACTAGTATAGGGAAAATGTTCTCCAGTGAGATGACTTTAGCATCAGCTTGGATTCACCTTTTGGTTATGGATCTCTTTGCTGCAAGgttctgcatcattacttttcttttaaattgagtatgttttcagtgcttgtaaatataattgaaattgattttagtcctccaaaatttatgtattttggtc
- - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC