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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAAAGCATGGGGCTCCCTTTTAGGACTACAgttggcagaaagaggcattatagtggcatgcattgattacaggtacctggtctcag

Basic information

species Glycine max
transcript GLYMA19G05840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G05840.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g49440.1 (Oryza sativa), 5'ss of exon 5
GTATAAAGCATGGGGCTCCCTTTTAGGACTACAgttggcagaaagaggcattatagtggcatgcattgattacaggtacctggtctcag-----------------------------------------------------------------------
||| ||||  |||||  ||||||| ||    |  |||||||| || |||||  |||| |||||||||||||||||||||      | |                                                                        
GTACAAAGGGTGGGGGGCCCTTTTGGGCAGGCGCTTGGCAGAGAGGGGCATCTTAGTTGCATGCATTGATTACAGgtactcaaaataaattccaaatatgcatatagaagaatgagggttcataccattttcatggagcataccaattatttgtttgcag

upper sequence: GLYMA19G05840.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g50170.1 (Oryza sativa), 5'ss of exon 5
GTATAAAGCATGGGGCTCCCTTTTAGGACTACAgttggcagaaagaggcattatagtggcatgcattgattacaggtacctggtctcag------------------------------------------------------------------------------------------------------------------------------
 || || || |||||  | ||| | |||     ||| |||||  |||| |||||||| ||||||||||||||||||| |     ||  |                                                                                                                              
TTACAAGGCGTGGGGTGCTCTTCTTGGAAGGAGGTTAGCAGAGCGAGGAATTATAGTTGCATGCATTGATTACAGgtgctcatactttgcatggattcctcatatatgattcttataattcttttttggtagatttttttttactgataagaatttactgattgatcgatttctttttgcttgcttgatgatatataaaagcatatgttttgcag

upper sequence: GLYMA19G05840.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G439203_T01 (Zea mays), 5'ss of exon 5
GTATAAAGCATGGGGCTCCCTTTTAGGACTACAgttggcagaaagaggcattatagtggcatgcattgattacaggtac-ctggtctcag---------------------------------------------------------------------
 || ||||  |||||  ||||||||||   ||  || |||||||| ||||| ||||| ||||||||||||||||||||| |||     |                                                                      
TTACAAAGGGTGGGGAGCCCTTTTAGGCAGACGCTTAGCAGAAAGGGGCATCATAGTTGCATGCATTGATTACAGgtactctgaatgtatttccaattatgcaaagcagcataatcattcaggccattgtcactgaggatgtaaatgctttgttttcag

upper sequence: GLYMA19G05840.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0006g00430.t01 (Vitis vinifera), 5'ss of exon 5
GTATAAAGCATGGGGCTCCCTTTTAGGACTACAgttggcagaaagaggcattatagtggcatgcattgattacaggtacctggtctcag--------------------------------------------------------------------------------------
||| |||||||||||||  ||| ||||||  ||||| |||||||||| ||| || ||||||||||| || ||| |||    | | |                                                                                         
GTACAAAGCATGGGGCTGTCTTCTAGGACAGCAGTTAGCAGAAAGAGACATCATGGTGGCATGCATCGACTACCGgtgatggtttttttttcttttgtcaagcattattgtatcatattcaacaatctacattaactcaggtgtgctacattgcccaatgtcctacaaaagactc