Sequence
atgc intronic sequence ATGC exonic sequenceATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGgtaagtgaatgtcatgcaatttacttcccactttctacctccatgggtaactccgctttgctttcattttgatggaaaagtttcgttagtgctatgctgg...
Basic information
species | Glycine max |
transcript | GLYMA19G03430.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G03430.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G29280.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGgtaagtgaatgtcatgcaatttacttcccactttctacctccatgggtaactccgctttgctttcattttgatggaaaagtttcgttagtgctatgctgg
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GTATCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATGAAGCAGCAGAGGACCATATCAGACAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTAgtaagtaaa-acca-acactttatt------cttgtgccattctcattacatttatgttg-tcttgttttgttgaatcaacacaccggggtttttgccag
upper sequence: GLYMA19G03430.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0108g01480.t01 (Vitis vinifera), 5'ss of exon 5
ATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGgtaagtgaatgtcatgcaatttacttcccactttctacctccatgggtaact-ccgctttgctttcattttgatggaaaagtttcg--ttagtgctatgctgg
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ATTGTGGTTTCTTTTGAGTGTGAGACACTGAAAGCTGATAAAGCAGCCGAAGACCATATTAGACAGTTCATGCCAAAATTAGCAGGGCTAGATGCTGTTGgtaagttactct-gtgcctgtcattcccccatttataactt-acaagaagctgccacagttgatcaagcaagaacttggggtcccagctttataccttacat-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193394132|gb|FK357717.1|FK357717EST: AGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTG TTAACATAGGAAAGATGACAATTTCTGGGTTGGATTTCGGAGAAGAGGACT
genomic: AGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGgtaagtgaat ... ataattgcagTTAACATAGGAAAGATGACAATTTCTGGGTTGGATTTCGGAGAAGAGGACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGgtaagtgaatgtcatgcaatttacttcccactttctacctccatgggtaactccgctttgctttcattttgatggaaaagtttcgttagtgctatgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT