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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGGCTTGCGCAAGATGCTCCAATGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTTATGACAGgttagcatatatactctcaaacatctcattttgttgaaccaaatgtttctattcatttgtagcatataatcacaagctttatgaaatacctagtccgggc...

Basic information

species Glycine max
transcript GLYMA19G02470.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G02470.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 5
TTTGGGCTTGCGCAAGATGCTCCAATGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTTATGACAGgttagcatatatactctcaaacatctcattttgttgaaccaaatgtttctattcatttgtagca-tataatcacaagctttatgaaatacctag-tccgggc--
|||||||||||  ||||||  ||  | || || |||||||| || || |||  ||||||||||||| | || |||||||| || |||||||||||||||||| ||    |   |  |||  || |    ||      |||    ||  |        |   | | |||||  ||   |    | |  | | ||  | |      
TTTGGGCTTGCCAAAGATGGCCCTGTAGGTGACAAAACTCACGTGTCTACTCGAGTAATGGGAACATATGGTTATGCAGCTCCGGAGTATGTTATGACAGgtaagtgcttcatcagtcat-caccagggttgacgttaccgccggtaaccgcgggggtacggtaatataaatac---cgcagtaacctccttaaattcaaataa

upper sequence: GLYMA19G02470.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0108g00380.t01 (Vitis vinifera), 5'ss of exon 5
TTTGGGCTTGCGCAAGATGCTCCAATGGGAGATAAAACTCATGTTTCCACTGAAGTAATGGGAACACAAGGCTATGCAGCCCCTGAGTATGTTATGACAGgttagcatatatactctcaaacatctcattttgttgaaccaaatgtttctattcatttgtagcatataatcacaagctttatgaaatacctagtccgggc-
||||| |||||  |||| | ||||   |||||||| || ||||| || |||   |||||||| ||  | ||||||||||||||||||||||| ||||||||| |  | |  ||  |||  |   ||  |||| ||       |  ||||| |   | ||   | | | | |       || ||     ||||||   | | 
TTTGGACTTGCCAAAGACGGTCCAGAAGGAGATAAGACACATGTATCTACTCGTGTAATGGGCACCTATGGCTATGCAGCCCCTGAGTATGTGATGACAGgtgactacacttaaactctcattactatttttattatttttgacatttctgtggctatgct-cttgtgacccatctaattctgctcctcctagttttgcca