1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACAGCAATTGCAGGTGACATCCGCAATAGTTGGGCTGGTGTTTCAACCTTGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAGgtgtgtgtatatatatattgaggcatttaattaacacccttaataaggtgaagaggaacactaattaaggttacattaatttggctaattttttttttta...
species | Glycine max |
transcript | GLYMA19G01470.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACAATCTCAAG AAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTGEST: gi|254336835|gb|GR843014.1|GR843014
genomic: GACAATCTCAAGgtgtgtgtat ... actcattcagAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTG
EST: TGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAG AAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTGEST: gi|21889538|gb|BQ742751.1|BQ742751
genomic: TGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAGgtgtgtgtat ... actcattcagAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTG
EST: TGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAG AAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTGEST: gi|254347310|gb|GR853559.1|GR853559
genomic: TGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAGgtgtgtgtat ... actcattcagAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGATTG
EST: TGCAGGCCCTTTTCATTCAAGA-CACAATGCAGTTTGTGACAATCTCAAG AAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGAT
genomic: TGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAGgtgtgtgtat ... actcattcagAAACATTATCCTCAATTGGGAGATGAAGAACTTTATCGCCATGCCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAGCAATTGCAGGTGACATCCGCAATAGTTGGGCTGGTGTTTCAACCTTGCAGGCCCTTTTCATTCAAGAACACAATGCAGTTTGTGACAATCTCAAGgtgtgtgtatatatatattgaggcatttaattaacacccttaataaggtgaagaggaacactaattaaggttacattaatttggctaattttttttttta
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