1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAGGGTTTTATTGATCCAAGTACAGAGAAAATCAGGACAATACCATTAGAAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttcatctgtttatcactctaggagcatgttatatatttgcacatttgcatttgtataatttgttagcaagtcgatcctggagtgagctaagctt...
species | Glycine max |
transcript | GLYMA19G01260.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTEST: gi|209701975|gb|BW661361.1|BW661361
genomic: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: AAAAGGCACCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTEST: gi|13480110|gb|BG509453.1|BG509453
genomic: AAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTEST: gi|31463367|gb|CD405395.1|CD405395
genomic: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACTAAGCTTCCGTTTAATGCTTTCGGTEST: gi|20208026|gb|BQ134115.1|BQ134115
genomic: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTEST: gi|105631978|gb|DW246266.1|DW246266
genomic: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: AAATTACGGTGAATGGAGAAAAGGCACCCGTTTATGGATCAACTTTAGAG GAGCTTGGTCTAAACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTEST: gi|27424039|gb|CA935559.1|CA935559
genomic: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTEST: gi|209726777|gb|BW672491.1|BW672491
genomic: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: CCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGTEST: gi|20812710|gb|BQ297188.1|BQ297188
genomic: CCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
EST: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAG GAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCCTTTAATGCTTTCGGT
genomic: AAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttca ... tgttggacagGAGCTTGGTCTATACAAGGCTCAAACAAAGCTTCCGTTTAATGCTTTCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGGTTTTATTGATCCAAGTACAGAGAAAATCAGGACAATACCATTAGAAATTACGGTGAATGGAGAAAAGGCACCTGTTTATGGATCAACTTTAGAGgtaatcttcatctgtttatcactctaggagcatgttatatatttgcacatttgcatttgtataatttgttagcaagtcgatcctggagtgagctaagctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA