1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTTTGGCCCATACAACCAGCTCCAAAGGACCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatactaaaccatacttgtttttcag
species | Glycine max |
transcript | GLYMA19G01200.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|33389257|gb|CA852464.1|CA852464
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|192317369|gb|FK011706.1|FK011706
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|7145963|gb|AW507885.1|AW507885
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|22521954|gb|BU080765.1|BU080765
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|19934596|gb|BQ079626.1|BQ079626
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|58024603|gb|CX711344.1|CX711344
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|192320824|gb|FK013914.1|FK013914
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|37996280|gb|CF807869.1|CF807869
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|9259484|gb|BE347639.1|BE347639
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|192327787|gb|FK022066.1|FK022066
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|254315424|gb|GR825233.1|GR825233
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|57576050|gb|CX549021.1|CX549021
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|192320825|gb|FK013915.1|FK013915
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|4300722|gb|AI443088.1|AI443088
genomic: CATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|254315423|gb|GR825232.1|GR825232
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|6848238|gb|AW350528.1|AW350528
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTGGCCCATACAACCAGCTCCAAAGGACCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCACCATTGATGCACAGgtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatactaaaccatacttgtttttcag
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