Sequence
atgc intronic sequence ATGC exonic sequenceGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaattgttcttatttttatcaaattatttttttgttgtgctttcatgcatcagtatggattcatttgaaattattgatgaactcacaaatttgagtttgttaaacaaatattgcttgtagtatcattcttcattggattgcttggctggttttgctactctttatttattcatttttttatag
Basic information
species | Glycine max |
transcript | GLYMA19G00260.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G00260.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g07740.2 (Oryza sativa), 5'ss of exon 7
GGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaattgttcttatttttatcaaattatttttttgttgtgctttcatgcatcagtatggattcatttgaaattattgatgaactcacaaatttgagtttgttaaacaaatattgcttgtagtatcattcttcattggattgcttggctggttttgctactctttatttattcatttttttatag
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TGGTCCAACGGTATTAGTGCTTTCTCCAACAAGGGAATTGGCAACACAAATCCAAGATGAAGCGAAAAAGTTTGGGAGATCGTCAAGAATATCGTCTGTTgtacgt---tcctcctatcttt-------tactcatctgttatgcgtttttgtgtcc-tataaagttgatgtcatctaat--tgtacctttttatttgaag---------------------------------------------------------------------------------------
upper sequence: GLYMA19G00260.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G066440_T01 (Zea mays), 5'ss of exon 6
GGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaattgttcttatttttatcaaattatttttttgttgtgctttcatgcatcagtatggattcatttgaaattattgatgaactcacaaatttga-gtttgttaaacaaatattgcttgtagtatcattcttcattggattgcttggctggttttgctactctttatttattcatttttttatag
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AGGTCCAACAGTATTAGTTTTGTCCCCAACCAGGGAATTGGCAACACAAATTCAAGATGAAGCAATCAAGTTTGGCAGATCTTCAAGAATATCTTCTACTgtatgttgctttatattttcttat-atctgttattatcattactctgcctaggtctagaac--atttgtcgtgttttaa-aatgaattaactacgttgatgcct-------------------------------------------------------------------------------------
upper sequence: GLYMA19G00260.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G14610.2 (Arabidopsis thaliana), 5'ss of exon 5
GGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaattgttcttatttttatcaaattatttttttgttgtgctttcatgcatcagtatggattcatttgaaattattgatgaactcacaaatttgagtttgttaaacaaatattgcttgtagtatcattcttcattggattgcttggctggttttgctactctttatttattcatttttttatag
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GGGCCCAACGATCTTGGTCTTGTCCCCTACTAGGGAGTTGGCCACACAAATCCAAGTTGAAGCTCTGAAATTTGGCAAGTCATCTAAAATTTCGTGTGCGgtaagtgaaaatacttgaatacataag----------tactgaacatgc-tacttgagaagtgtcttattgagtgtttttg-tcaatgtatatttgtag-----------------------------------------------------------------------------------------
upper sequence: GLYMA19G00260.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0066g01020.t01 (Vitis vinifera), 5'ss of exon 5
GGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaattgttcttatttttatcaaattatttttttgttgtgctttcatgcatcagtatggattcatttgaaattattgatgaactcacaaatttgagtttgttaaacaaatattgcttgtagtatcattcttcattggattgcttggctggttttgctactctttatttattcatttttttatag
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GGGTCCAACTGTTTTGGTACTCTCACCAACTAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGAAGATCATCAAGACTTTCATGCACAgtttgtta-----cttgcaactcttaa--tacctttttgctgt----ttaggaaaaatgattgttttaattgctgatgttagtt--ctcatttgtttttgtcttttaag-------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192328463|gb|FK023509.1|FK023509EST: TACAAGATGATGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCA TGTTTGTATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGATCGT
genomic: TACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaatt ... ttttttatagTGTTTGTATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGATCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCCATGAAGTTTGGGAAATCATCTAGAATTTCATGTGCAgtaagtaattgttcttatttttatcaaattatttttttgttgtgctttcatgcatcagtatggattcatttgaaattattgatgaactcacaaatttgagtttgttaaacaaatattgcttgtagtatcattcttcattggattgcttggctggttttgctactctttatttattcatttttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC