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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAAGTGTTGCCTCTTTCTTCGTCAGTAGAGTGGACACCCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtttattgttttccaaatttaaattattacctttggatttatcacactttcgaatgtcaaatatgctgtgctcataggattgcacattgaattttaca

Basic information

species Glycine max
transcript GLYMA18G53700.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G53700.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 5'ss of exon 5
TTACAAGTGTTGCCTCTTTCTTCGTCAGTAGAGTGGACACCCTCATTGACAAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtttattgttttccaaatttaaattatta-cctttggatttatcacactttcgaatgtcaaat-atgctgtgctcataggattgcacattgaattttaca
 ||||||||||||||| ||||| |||||| | || ||||||||||||||||||   |||||||||||||| || |||| ||||||| |||| || || |||||||      |||  ||| |||  | ||||| | | ||||| ||    | | |  |  | |  | | || |||      | ||| | |                  
-TACAAGTGTTGCCTCCTTCTTTGTCAGTCGGGTAGACACCCTCATTGACAAGTTGCTTGAGAAAATTGGAACTCCAGAGGCCCTTGATCTCCGAGGAAAGgtaataa---attaatttacaa--tcaaattgtcatccttttgagggtttaaaactcaggacctaatatcatgggacttttatatgttctag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7041883|gb|AW471777.1|AW471777
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|58017240|gb|CX703982.1|CX703982
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|254347696|gb|GR853945.1|GR853945
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|298186515|gb|HO037148.1|HO037148
EST:     GAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|19452834|gb|BM954244.1|BM954244
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|151398727|gb|EV268598.1|EV268598
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|58014569|gb|CX701311.1|CX701311
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|58018609|gb|CX705351.1|CX705351
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|58017437|gb|CX704179.1|CX704179
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|308098810|gb|HO760651.1|HO760651
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGTGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|298196531|gb|HO041274.1|HO041274
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTA
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTA
EST: gi|5175583|gb|AI759916.1|AI759916
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|6846407|gb|AW348697.1|AW348697
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCNNNTAATCTACGCGNNNA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|254347695|gb|GR853944.1|GR853944
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|58023410|gb|CX710151.1|CX710151
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|298172256|gb|HO021848.1|HO021848
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|208242597|gb|GE038795.1|GE038795
EST:     CTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: CTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
EST: gi|298191275|gb|HO038754.1|HO038754
EST:     AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAA                         GGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT
genomic: AAGGCCCTTGAGAAAATTGGCACCCCAGTGGCCCTTAATCTACGCGGGAAggtaactgtt ... gaattttacaGGCAGCGGTAGCCCAAGCAGCATTGGCTTACCAGCTCTACCAAAGGAAATT