1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCCAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGgtttaatggataatttctttttatcaagatagattattttctttttggaatgcaattggagttttgtgtttgcttgtgttag
species | Glycine max |
transcript | GLYMA18G52160.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAACTGATGGTGGAAGTGGACTGAAGCAGTTTGAAGATCCTGTCTTAAAG GATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAAEST: gi|6501834|gb|AW203193.1|AW203193
genomic: CAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGgtttaatgga ... cttgtgttagGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAA
EST: CAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAG GATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGEST: gi|6070794|gb|AW100181.1|AW100181
genomic: CAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGgtttaatgga ... cttgtgttagGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTG
EST: AAGCAGTTTGAAGATCTTGTCTTAAAG GATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAAEST: gi|5676856|gb|AI937986.1|AI937986
genomic: AAGCAGTTTGAAGATCTTGTCTTAAAGgtttaatgga ... cttgtgttagGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAA
EST: CAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAG GATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTEST: gi|21677449|gb|BQ629800.1|BQ629800
genomic: CAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGgtttaatgga ... cttgtgttagGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCT
EST: CAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAG GATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAA
genomic: CAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGgtttaatgga ... cttgtgttagGATGGTTATCGTGCTGTTCGATTCAACCCAGAATTGTGGCCAGCTGGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTTGAAGAAATACCCGACCAAATTTGTTGGTTGTTGCCTTGCTAATCCAACTGATGATGGAAGTGGACTGAAGCAGTTTGAAGATCTTGTCTTAAAGgtttaatggataatttctttttatcaagatagattattttctttttggaatgcaattggagttttgtgtttgcttgtgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA