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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGAAACACCAAAGGACCACAGAAAGGCTAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTACCAGgtttatatttgtttagtatttaaagaatgtccttaacctattgcattaatttatggattaaaatctggagatttgttgttttggcatccaatccaactac...

Basic information

species Glycine max
transcript GLYMA18G51310.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTTGAAACACCAAAGGACCACAGAAAGGCTAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTACCAGgtttatatttgtttagtatttaaagaatgtccttaacctattgcattaatttatggattaaaatctggagatttgttgttttggcatccaatccaactac
 |||| ||  ||  |||  || || ||| |||| |||| |||||| || || ||||||||||| || ||||||||||||||||||||||| |||||||||||        ||| |   ||||     | || |   |  ||| ||||    | ||||  ||  | | |   |   | |    ||| |||| | ||     
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaa------gttgaaattttagcatctctcatgctctcatttcatttcagtttgga--aacgtttcgtt-taactagccaaggcttccattgcag----

upper sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 5'ss of exon 5
ATTTGAAACACCAAAGGACCACAGAAAGGCTAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTACCAGgtttatatttgtttagtatttaaaga-atgtccttaacctattgcattaatttatggattaaaatctggagattt--gttgttttggcatccaatccaactac
||||| ||| || ||||| ||||| || ||||| ||||  |||||||| || |||| ||||||| | | |||||| ||||||||||||||||| |||||||||  | |   |  | | || |      ||   |  |   || |  | |  || |   |  |  |||     |||  ||    |  | |  || |  ||  | 
ATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATGTCTTTGCTTTCTCACTTGCTGATGATCATATATGGTTCCGGAACTACCAGgttcgtgtagttcaaatcttcatctttgtgatttagattcatagtgtaa--ttctaattgcatgtcttatattttaggtaaaataaggaggcattgaaataa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404906|gb|EV274720.1|EV274720
EST:     TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTACCAG                         ATCTCTGTTCATCATAATGAAGCGGACAAATTACCTAGAGGTGGCCTTGAT
genomic: TTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTACCAGgtttatattt ... tcccttgcagATCTCTGTTCATCATAATGAAGCGGACAAATTACCTAGAGGTGGCCTTGAT