Sequence
atgc intronic sequence ATGC exonic sequenceCTGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATggtaatgttccgttatttcagtatttcccgtattagtgaaatacaactgtggtatatttacagcttatccttgggaatggtgataccttgtttgaatcct...
Basic information
species | Glycine max |
transcript | GLYMA18G50960.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G50960.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g21780.1 (Oryza sativa), 5'ss of exon 5
CTGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATggtaatgttccgttatttcagta-tttcccgtattagtgaaataca------actgtggtatatttacagcttatccttgggaatggtgataccttgtttgaatcct
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-GGAAGATTCCTTGAAGAAAAAGTGGAAGAAAATAGAAGAATTTGATGCTCGTAGATCAGAACTTGAGTGCATTTACAATGCTCTTCTGCGGGCCAATATGgt--tagtctggagcctttgtacttttccttactagctctttacttagttcgctattcaattttttaaagaaagttttagatatagacatgaat-atagaaat---
upper sequence: GLYMA18G50960.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0083g00990.t01 (Vitis vinifera), 5'ss of exon 5
CTGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATggtaatgttccgttatttcagtatttcccgtattagtgaaatacaactgtggtatatttacagc--ttatccttgggaatggtgataccttgtttgaatcct
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-GGAGGACTCTCTCAGAAAGAAGTGGAAAAAGATTGAAGAATTTGATGCCCGCAGATCTGAACTTGAAGCCATATATAGTGCTTTACTCAAATCTAACATGgtaaggtagcttggcttcatgaaattacagatcagtcagtggtatttatcagataattgtggcaatcatgatatcaataggtgatttcat-caagcatcta
upper sequence: GLYMA18G50960.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S189_50V6.2 (Physcomitrella patens), 5'ss of exon 5
CTGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATggtaatgttccgttatttcagtatttcccgtattagtgaaataca---actgtggtatatttacagcttatccttgggaatggtgatacc-ttgtttgaatcct-
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-TGAGGAGTCCCTACAGGAGAAATGGAAGAAGATTGAAGAGTTTGATGCCAGGCGGGTGGAGCTTGAATCGATCTATACATCCTTGCTGCGTGCAAACACGgta----tctgtcttctcaattatacctaaagttacaaatgtcatggattgtgaaacttatgaagaacatctattcaaacatcgatatcgttcattaaagctttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22522696|gb|BU081507.1|BU081507EST: CGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATAT GGATGCTGCTTCATTTTGGAGTCAGCAACCATTAACTGCAAGGGAGTATGC
genomic: CGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATggtaatgttc ... atataatgcaGGATGCTGCTTCATTTTGGAGTCAGCAACCATTAACTGCAAGGGAGTATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAAGATTCTCTAAAGAAAAAATGGAAAAAGATTGAAGAGTTTGATGCTCGTAGATCAGAACTTGAGACTATATATATGGCACTCCTTAAAGCAAATATggtaatgttccgttatttcagtatttcccgtattagtgaaatacaactgtggtatatttacagcttatccttgggaatggtgataccttgtttgaatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA