1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATTCTGAGTGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagcgtgatcctaacttgtttcgatttctggagttaaaagctttcttaaatactgtgaatattttcttaattcttcatcataaaacatcaaaacttttacttcttattttgataaactatagaaggtaattactgatttttaagttgcttttaacag
species | Glycine max |
transcript | GLYMA18G50760.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAA ATGATACTGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACCEST: gi|6071984|gb|AW101371.1|AW101371
genomic: TCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagcgtga ... cttttaacagATGATACTGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACC
EST: TCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAA ATGATACTGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACCEST: gi|208165412|gb|GD961580.1|GD961580
genomic: TCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagcgtga ... cttttaacagATGATACTGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACC
EST: TCAACTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAA ATGATACTGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTAAACC
genomic: TCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagcgtga ... cttttaacagATGATACTGCAATGCTATGGGGAGTTAAGTTCTATAATGATTTTCTCAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCTGAGTGGAACATGGTTGTTCAACATCCAAACTTTGACAATCTGACTCAGCTGTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAgtaagcgtgatcctaacttgtttcgatttctggagttaaaagctttcttaaatactgtgaatattttcttaattcttcatcataaaacatcaaaacttttacttcttattttgataaactatagaaggtaattactgatttttaagttgcttttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT