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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatttgattggcctttgtgtctctttatctattggtactttgtctccagtgagctggacctaacttttttattctctttgttggtgaaatattttgctttaagtggatcaccaaaggtcatgattgtgttgacatatagttttcttaccttgatttgtgatctgtttttatatgta

Basic information

species Glycine max
transcript GLYMA18G48610.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21993817|gb|BQ785345.1|BQ785345
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|213615420|gb|DB965506.1|DB965506
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|298174542|gb|HO017765.1|HO017765
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|8403151|gb|BE058785.1|BE058785
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|213619737|gb|DB967359.1|DB967359
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|13181256|gb|BG352596.1|BG352596
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|213590611|gb|DB973342.1|DB973342
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|192299109|gb|FG992870.1|FG992870
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|254317320|gb|GR826265.1|GR826265
EST:     -AAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|209726159|gb|BW677900.1|BW677900
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|254317319|gb|GR826264.1|GR826264
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|22524492|gb|BU083303.1|BU083303
EST:     AATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: AATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|298182292|gb|HO026467.1|HO026467
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|21600841|gb|BQ611172.1|BQ611172
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|151407899|gb|EV277714.1|EV277714
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|192322414|gb|FK014895.1|FK014895
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|19346832|gb|BM891712.1|BM891712
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|8826765|gb|BE210495.1|BE210495
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATNTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|14259352|gb|BG882260.1|BG882260
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|209719631|gb|BW672086.1|BW672086
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|298184517|gb|HO029730.1|HO029730
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
EST: gi|213602253|gb|DB958513.1|DB958513
EST:     TAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGAT                         CTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA
genomic: GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatt ... tttatatgtaGTGGGACACAGCCGGGCAAGAACGATTTAGGACAATCACCAGTAGCTACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAATACGTACTGTTGAGCAGGATGGAAAGACCATTAAACTACAGATcgtatgtatttgattggcctttgtgtctctttatctattggtactttgtctccagtgagctggacctaacttttttattctctttgttggtgaaatattttgctttaagtggatcaccaaaggtcatgattgtgttgacatatagttttcttaccttgatttgtgatctgtttttatatgta

- - - - - - - - GAGCAG
- - - - - - - - - - AGGATG
- - - - - - - - - - - GATGGA