1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctcttataatgtatttgtagagttaaaagaatattttttttaaagtatatactttcatgtttagctgtctcatcaaacttacagg
species | Glycine max |
transcript | GLYMA18G48180.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATEST: gi|193371225|gb|FK338194.1|FK338194
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGEST: gi|193539965|gb|FK496975.1|FK496975
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTG
EST: ATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATEST: gi|208257253|gb|GE056696.1|GE056696
genomic: ATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATEST: gi|208038776|gb|GD832786.1|GD832786
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCEST: gi|193600910|gb|FK552981.1|FK552981
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGC
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATEST: gi|151407974|gb|EV277789.1|EV277789
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATEST: gi|208321784|gb|GE124289.1|GE124289
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGATEST: gi|193710834|gb|FK644689.1|FK644689
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG AGTGAAAAGAAGAGAAGAATTGTAAGACCAGAACGAATAATGCTAGAGCAA
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGT--G-CCAGAACGAATAATGCTAGAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctcttataatgtatttgtagagttaaaagaatattttttttaaagtatatactttcatgtttagctgtctcatcaaacttacagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG