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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctcttataatgtatttgtagagttaaaagaatattttttttaaagtatatactttcatgtttagctgtctcatcaaacttacagg

Basic information

species Glycine max
transcript GLYMA18G48180.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208231920|gb|GE032737.1|GE032737
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: gi|193371225|gb|FK338194.1|FK338194
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTG
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTG
EST: gi|193539965|gb|FK496975.1|FK496975
EST:     ATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
genomic: ATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: gi|208257253|gb|GE056696.1|GE056696
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: gi|208038776|gb|GD832786.1|GD832786
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGC
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGC
EST: gi|193600910|gb|FK552981.1|FK552981
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: gi|151407974|gb|EV277789.1|EV277789
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: gi|208321784|gb|GE124289.1|GE124289
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGTGCCAGAACGAATAATGCTAGAGCAAGAT
EST: gi|193710834|gb|FK644689.1|FK644689
EST:     GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGG                         AGTGAAAAGAAGAGAAGAATTGTAAGACCAGAACGAATAATGCTAGAGCAA
genomic: GCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctctt ... aacttacaggAGTGAAAAGAAGAGAAGAATTGT--G-CCAGAACGAATAATGCTAGAGCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAGAAATACTTCATGTTTATGGATCTCTGGTTCCTGATCACACAGGCAGCATTTATTGGTTGGATAAGAACTTGGAAGTTGATTCCCATTCTGACAGGtttttctcttataatgtatttgtagagttaaaagaatattttttttaaagtatatactttcatgtttagctgtctcatcaaacttacagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG