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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTGTGCTAATCAAATTCATAAGGCTGCCATGGCAATAAACAGCAATGTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAAggttagtcctcattggtgatccctagtgttaaacataataatttctgtttctaaaagtcccagtctgaaactctgttgaaatctcagaatgagtcttgtt...

Basic information

species Glycine max
transcript GLYMA18G46690.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522497|gb|BU081308.1|BU081308
EST:     GTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAA                         GCTGAAATTCTATTGCCAAGTGATTGAGGATTCCTTTAAATGTGACCCCAT
genomic: GTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAAggttagtcct ... tgtttttccaGCTGAAATTCTATTGCCAAGTGATTGAGGATTCCTTTAAATGTGACCCCAT
EST: gi|208284382|gb|GE085042.1|GE085042
EST:     GTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAA                         GCTGAAATTCTATTGCCAAGTGATTGAGGATTCCTTTAAATGTGACCCCAT
genomic: GTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAAggttagtcct ... tgtttttccaGCTGAAATTCTATTGCCAAGTGATTGAGGATTCCTTTAAATGTGACCCCAT
EST: gi|298197873|gb|HO039412.1|HO039412
EST:     GTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAA                         GCTGAAATTCTATTGCCAAGTGATTGAGGATTCCTTTAA
genomic: GTTCTTGCAGAAATAGATATCCCAGAAACATATATAGATAATCTTCCCAAggttagtcct ... tgtttttccaGCTGAAATTCTATTGCCAAGTGATTGAGGATTCCTTTAA