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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcattcttagtgttgccataaaatatgatgatattatagattgaatacacatctctgatccccccttgttaaaaattaaaaaattgcagttact...

Basic information

species Glycine max
transcript GLYMA18G46540.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208187447|gb|GD985477.1|GD985477
EST:     TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAG                         GTGGTAGTTGGGAGTTTTC-ATGGGGTGGATCAAAG-CAAAGA-CAAGAAA
genomic: TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcat ... atgactatagGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAA
EST: gi|207794584|gb|GD767233.1|GD767233
EST:     TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAG                         GTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAG
genomic: TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcat ... atgactatagGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAG
EST: gi|208054544|gb|GD850187.1|GD850187
EST:     GTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAG                         GTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAA
genomic: GTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcat ... atgactatagGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAA
EST: gi|193434765|gb|FK402849.1|FK402849
EST:     TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAG                         GTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAAGACAAAGAACAAGAA
genomic: TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcat ... atgactatagGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAA-GACAAAGAACAAGAA
EST: gi|208140510|gb|GD938660.1|GD938660
EST:     TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAG                         GTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAA
genomic: TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcat ... atgactatagGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAA
EST: gi|12489487|gb|BG043009.1|BG043009
EST:     TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAG                         GTGGTAGTTGGGAGT
genomic: TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcat ... atgactatagGTGGTAGTTGGGAGT
EST: gi|207813905|gb|GD785140.1|GD785140
EST:     TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAG                         GTGGTAGTTGGGAGTTTTC
genomic: TCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcat ... atgactatagGTGGTAGTTGGGAGTTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGgtaacagcattcttagtgttgccataaaatatgatgatattatagattgaatacacatctctgatccccccttgttaaaaattaaaaaattgcagttact

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa