1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAACCATGCTGGTCCAAGCACAGATGTGGAAAACATCGCTCTTATGCCAAGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAAggtaatgctatacctcctgccatgcatcttgacaaagagtcacccctaataactgaagcgattggatgaatgccggtgtttttagcttttagctttacga...
species | Glycine max |
transcript | GLYMA18G46310.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAA GATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGGEST: gi|193423473|gb|FK391100.1|FK391100
genomic: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAAggtaatgcta ... ctcatctgcaGATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGG
EST: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGCCTGAA GATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGGEST: gi|192328169|gb|FK022863.1|FK022863
genomic: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAAggtaatgcta ... ctcatctgcaGATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGG
EST: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAA GATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGGEST: gi|308098263|gb|HO760004.1|HO760004
genomic: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAAggtaatgcta ... ctcatctgcaGATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGG
EST: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAA GATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGG
genomic: AGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAAggtaatgcta ... ctcatctgcaGATGGCAGGCTCACCACATACTTCGTCACTTGAGCGCAGAGTAACCGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACCATGCTGGTCCAAGCACAGATGTGGAAAACATCGCTCTTATGCCAAGAGCAACTGAGGGATCAGTTGTTTTGAGATCACCATCAAAAAGTTTGAAggtaatgctatacctcctgccatgcatcttgacaaagagtcacccctaataactgaagcgattggatgaatgccggtgtttttagcttttagctttacga
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccct