Sequence
atgc intronic sequence ATGC exonic sequenceAGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAggtattttctgtcaccaaacatggatttgaacaataactctggtgccggttactgaaaaaattagcgacaaaagtatatgcaaaatctctagttcatgta...
Basic information
species | Glycine max |
transcript | GLYMA18G44940.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G44940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0056g00580.t01 (Vitis vinifera), 5'ss of exon 4
AGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAggtattttctgtcaccaaacatggatttgaacaataactctggtgccggttactgaaaaaattagcgacaaaagtatatgcaaaatctctagttcatgta------
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-GAGGAATGAGCAAAAGAAGCTTATTGGCATGGCCCGTGCTACATCAGATCATGCCTTCAATGCCACAATTTGGGATGTCCTTGTTGATCCTTCATATCAGgtattcttcat----atctttgccttggaaaagagatcctggttgtggacatttaaggaga-attttccttctcagacccaaaattgtaataacatgaacatgtt
upper sequence: GLYMA18G44940.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S332_23V6.1 (Physcomitrella patens), 5'ss of exon 7
AGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAggtattttctgtcaccaaacatggatttgaacaataactctggtgccggttactgaaaaaattagcgacaaaagtatatgcaa--aatctctagttcatgta-
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-CGTTGTAGAGAAGCGAGAACTTATTGGCATGGCCCGGGCTACATCTGACCACGCCTTCAATGCTACCATTTGGGACGTGCTTGTAGATCCATTATATCAGgtagt--ctgcttctgaagctggttttatgctttaaatccagtgtccattttttgtgaatatatttaaatgtacagatattaccaattaatgatttttaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6915559|gb|AW397089.1|AW397089EST: CATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCA GGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCT
genomic: CATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAggtattttct ... tctttgtataGGGCCAAGGTCTTGGTAAAGCTCTTATAGAGAAACTGATTCGAACTCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGGGAATGAACAGAAGAGATTAATTGGCATGGCCCGTGCTACGTCTGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAggtattttctgtcaccaaacatggatttgaacaataactctggtgccggttactgaaaaaattagcgacaaaagtatatgcaaaatctctagttcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa