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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCTAGAATTATCCAAAAGCTTGGTTTCCCAGCTAAATTTAAggtacaacatccgctctgaaaattgtcagttgttttccactctacagaagtagtttgtgatcattgacttattccttttttttcttttttgtgcttta

Basic information

species Glycine max
transcript GLYMA18G44460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 6
GTATGCTAGAATTATCCAAAAGCTTGGTTTCCCAGCTAAATTTAAggtacaacatccgctctgaaaattgtcagttgttttccactctacagaagtagtttgtgatcattgacttattccttttttttcttttttgtgcttta------------------------------
 |||||| ||||||| || ||||| ||||| ||||||||||||||||||     |||  |       |       |||  |  |  | |     ||  |   |  || |   ||| ||  |||       || || |  | ||                              
-TATGCTCGAATTATTCAGAAGCTCGGTTTTCCAGCTAAATTTAAGgtatttattccattacatctctctctctctgtgatgtagccaatttctgttatgc-tattcttctccttgtttttttgccactgttcttattttatattgactgctgttttttattgtgggatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467402|gb|CD409430.1|CD409430
EST:     GTATGCTAGAATTATCCCAAAGCTTGGTTTCCCAGCTAAATTTAA                         GGATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTCCCCAT
genomic: GTATGCTAGAATTATCCAAAAGCTTGGTTTCCCAGCTAAATTTAAggtacaacat ... ttgtgctttaGGATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTCCCCAT
EST: gi|9440109|gb|BE440620.1|BE440620
EST:     GTATGCTAGAATTATCCAAAAGCTTGGTTTCCCAGCTAAATTTAA                         GGATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTCCCCAT
genomic: GTATGCTAGAATTATCCAAAAGCTTGGTTTCCCAGCTAAATTTAAggtacaacat ... ttgtgctttaGGATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTAAAGTTCCCCAT